This data set is meant for the analyses requiring both male and female gene annotation. It contains gene annotation of Tak1 reference genome (male, MpTak1v5.1) and scaffolds derived from sex chromosome of BC4 (female, JGI3.1).


- tak1v5.1_with_female_chr.fasta
	Genomic fasta file 
	Contains 3 kind of sequences:
		- chromosomal sequences from male Tak1 [chr1 - 8, chrV(Y)]
		- unplaced scaffolds from male Tak1 [unplaced-scaffold_010 - 444]
		- scaffolds derived from U chromosome of female BC4 strain
		  [chrU-scaffold_17, chrU-scaffold_18, chrU-scaffold_210, chrU-scaffold_227, chrU-scaffold_240, chrU-scaffold_250, chrU-scaffold_497]

- tak1v5.1r1_with_female_chr.gff
	Gene annotation in GFF3 format
	Genes from v5.1 genome are prefixed with 'Mp', e.g. Mp3g23300.1
	Genes from v3.1 genome are prefixed with 'Mapoly', e.g. Mapoly0017s0009.1

	Only contains the primary transcript of mRNA for each locus (Mp#gNNNNN.1 or Mapoly####sNNNN.1).
	Duplication such as Mp1g28950 and Mp1g28960 were removed.

- tak1v5.1r1_with_female_chr.gtf
	Same as above, but in GTF format

- README
	This file
