Mp1g01960



Description

Annotation

Database ID Description
FunFam G3DSA:1.10.20.10:FF:000006 Nuclear transcription factor Y subunit gamma
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR10252 HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED
Pfam PF00125 Core histone H2A/H2B/H3/H4
Gene3D G3DSA:1.10.20.10 Histone, subunit A
SUPERFAMILY SSF47113 Histone-fold
KEGG K08066 nuclear transcription factor Y, gamma
KOG KOG1657 CCAAT-binding factor, subunit C (HAP5); N-term missing; [K]
MapolyID Mapoly0029s0049 -
GO GO:0005634 nucleus
GO GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO GO:0006357 regulation of transcription by RNA polymerase II
GO GO:0046982 protein heterodimerization activity
GO GO:0003677 DNA binding
GO GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific

Nomenclature

Gene symbol Product Transcript ID Status
MpCCAAT-NFYC4 transcription factor, CCAAT-NFYC Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp1g01960.1 chr1:2156617..2161361 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g01960.2 chr1:2156604..2161361 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g01960 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g01960 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.