Gene-linked Literature

AI-based literature mining (Beta version). This dataset is generated automatically and its content is not guaranteed to be correct. Some papers may be missed, and the most recent publications may not yet be reflected. Please verify against the original references.

Papers linked by the literature-mining pipeline to MarpolBase genes (by v7.1 ID or gene name). Counts = core functionally-studied / peripheral (tool / comparative / citation).

e.g. RSL1  rhizoid  "cell cycle"  — full-text over titles, authors, gene names & per-paper notes.

489 paper(s)

Journal Title core/periph Linked genes
Kang HS, Tong X, Mariette A, Leong M, Beahan C, Flores-Sandoval E, Pedersen GB, Rautengarten C, Bowman JL, Ebert B, Bacic A, Doblin MS, Persson S, Lampugnani ER.
The Plant journal : for cell and molecular biology
2025 		Cell wall-related glycosyltransferases and wall architecture in the model liverwort Marchantia polymorpha.
research
 37 / 24 MpGT43.1 MpGT8.1 MpGT29.1 MpGT8.2 Mp1g12020 MpGT77.1 Mp1g13860 MpRRT1 Mp1g18380 MpGT29.2 MpCSLD3 MpGT8.3 +49 more
Jibran, R., et al.
Frontiers in Plant Science
2024b 		DWARF27 and CAROTENOID CLEAVAGE DIOXYGENASE 7 genes regulate release, germination and growth of gemma in Marchantia polymorpha.
research
 4 / 48 Mp1g18730 MpCCD7 MpNCED MpLOX6 Mp2g15700 Mp2g25340 MpSMXL Mp3g07970 MpCNL1 Mp3g10470 MpTRIHELIX16 MpCYP704-like8 +40 more
Clayton, W. A., et al.
Plant Journal
2018 		UVR8- mediated induction of flavonoid biosynthesis for UVB tolerance is conserved between the liverwort Marchantia polymorpha and flowering plants.
research
 6 / 38 Mp1g03260 MpPAL1 Mp1g12530 MpDUO1 MpPPR_16 Mp1g15490 MpHY5 Mp1g22750 Mp1g26540 Mp1g27830 MpBHLH4 Mp2g01670 +32 more
Bowman, J. L., et al.
Plant Cell
2022 		The renaissance and enlightenment of Marchantia as a model system.
review
 0 / 41 Mp1g01980 MpFRH1 MpRAB5 MpWIP MpRRT1 MpGOS11 MpATG8a MpCLC1 MpTUB2 MpSEC22 MpTGA MpSYP4 +29 more
Rico-Reséndiz, F., et al.
International Journal of Molecular Sciences
2020 		Transcriptional and Morpho-Physiological Responses of Marchantia polymorpha upon Phosphate Starvation.
research
 16 / 25 MpEDS5 MpSPX MpMATE1 MpMGDG MpMLS3 MpVPT MpPLD1 MpDAG MpLPR2 MpRBOH2 MpPAH MpALMT3 +29 more
Briginshaw, L. N., et al.
New Phytologist
2022 		KANADI promotes thallus differentiation and FR-induced gametangiophore formation in the liverwort Marchantia.
research
 3 / 37 MpLOG MpCYP716 MpFGMYB MpLOX5 Mp1g28830 Mp2g02350 MpCHK1 MpCCD7 Mp2g13230 MpPHY MpKAN MpRLK-Pelle_RKF3c +28 more
Csicsely, E., et al.
The Plant Journal
2025 		Identification and characterization of DICER-LIKE genes and their roles in Marchantia polymorpha development and salt stress response.
research
 4 / 30 MpDCL3 MpRGI-like MpARF3 MpFGMYB MpSAUR8 MpABCB1 MpBHLH37 MpGH3B MpC2HDZ MpCYCA MpSHI MpR2R3-MYB8 +22 more
Kobayashi, H., et al.
Frontiers in Plant Science
2023 		Comprehensive analysis of peptide-coding genes and initial characterization of an LRR-only microprotein in Marchantia polymorpha.
research
 7 / 26 Mp1g07140 MpWIP MpSGF6 MpDIR2 MpSGF10B MpSGF17 Mp3g15410 MpBNB MpDIR49 Mp4g08500 MpDIR23 MpUGT21 +21 more
Michavila S, Espinosa-Cores L, Kneeshaw S, Torres S, Siroka J, Zamarreno AM, Gonzalez-Zuloaga M, Garcia-Mina JM, Novak O, Solano R, Gimenez-Ibanez S.
Plant & cell physiology
2026 		Salicylic acid and the unique TGA transcription factor controls plant immunity against Pseudomonas syringae in Marchantia polymorpha.
research
 2 / 29 MpNPR MpACRE132 MpTGA MpICS MpPR4 MpPR1 MpEF1 MpPR5 MpCML42 MpEDS5A MpERF MpGST +19 more
Melissa DÁ, Luis LJ, Eduardo FS, Annie EC, Domingo MÁ, Tom FJ, Jesús LR, Fernando OM, John BL, Mario AA, Cruz-Ramírez A.
Physiologia plantarum
2025 		The MpANT-Auxin Loop Modulates Marchantia polymorpha Development.
research
 14 / 17 MpDCL3 MpLFY MpARF3 MpSPL2 MpGRAS3 MpWOX MpARF1 MpCHK1 MpSHI MpPIN1 MpMADS2 MpARF2 +19 more
Forestier ECF, Asprilla P, Bonter I, Romani F, Frangedakis E, Haseloff J.
Communications biology
2026 		Spatial distribution of isoprenoid enzymes and MpABCG1 transporter influences sesquiterpene accumulation in Marchantia polymorpha oil bodies.
research
 13 / 17 MpIDS5 MpDXS1 MpIDS2 MpTGA MpSQS1 MpMVD MpC1HDZ MpSQS2 MpIDS1 MpIDI1 MpSQS3 MpMK +18 more
Lozano-Quiles M, Raval PK, Rensing SA, Gould SB.
Plant Reproduction
2026 		SWI3A/B regulates the transition from vegetative to reproductive phase in the liverwort Marchantia polymorpha.
research
 1 / 24 MpDUO1 MpKOL3 MpKOL2 MpCKI1 MpSETA MpKAI2B MpBHLH31 MpBHLH30 MpBHLH29 MpPHY MpLRL MpBHLH21 +13 more
Romani, F., et al.
The Plant Cell
2026 		A simple cell-cycle control system in Marchantia polymorpha provides a framework for understanding plant cell proliferation
research
 8 / 15 MpCDC25_2 MpE2F MpCDC20_2 MpCYCD_2 MpWEE1 MpCYCB_2 MpCDKA MpCYCA MpCDC20_1 MpKRP MpDP1 MpDEL1 +11 more
Aggarwal, B., et al.
RNA Biology
2024 		MiRNAs differentially expressed in vegetative and reproductive organs of Marchantia polymorpha – insights into their expression pattern, gene structures and function.
research
 10 / 13 Mp1g05970 MpFRH1 Mp1g06610 MpARF3 MpSPL1 MpSPL2 Mp1g15010 MpMDHAR1 Mp1g20730 MpC3HDZ MpR2R3-MYB21 MpRSL1 +11 more
Kanazawa, T., et al.
Nature Communications
2020 		The liverwort oil body is formed by redirection of the secretory pathway.
research
 7 / 16 MpSEC20 MpUSE1A MpGOS11 MpCLC1 MpTUB2 MpSEC22 MpSYP4 MpSYP13B MpC1HDZ MpSFT1 MpMYB02 MpSYP6A +11 more
Li, T., et al.
Cells
2021b 		Roles of a Cryptochrome in Carbon Fixation and Sucrose Metabolism in the Liverwort Marchantia polymorpha3387
research
 14 / 8 MpHY5 MpUVR8 MpSuS MpPHY MpSPS MpCRY Mp3g02080 MpSPS MpFKF MpPIF MpRBCS MpRBCS +10 more
Sakai Y, Takami H, Yamaoka S, Kato H, Fukaki H, Kohchi T, Ishizaki K.
The New phytologist
2025 		SHOT GLASS, an R2R3-MYB transcription factor, promotes gemma cup and gametangiophore development in Marchantia polymorpha.
research
 2 / 19 MpLOG MpWRKY11 MpHA9 MpTRIHELIX12 MpRKD MpKAN MpPIF MpRSL1 MpBNB MpEF1 MpGARP2 MpRRB +9 more
Sun, R., et al.
Plant Cell
2023 		Biosynthesis of gibberellin-related compounds modulates far-red light responses in the liverwort Marchantia polymorpha.
research
 9 / 12 MpLOG MpKAOL2 MpKOL3 MpKOL2 MpTPS3 MpNCED MpKAOL3 MpCYP707A MpTPS6 MpPIF MpKOL1 MpBNB +9 more
El Mahboubi K, Beaulieu C, Castel B, Libourel C, Jariais N, Amblard E, van Beveren F, Keller J, Martinez Y, Nelson JM, Bonhomme M, Jacquet C, Delaux PM.
Proceedings of the National Academy of Sciences of the United States of America
2026 		Plant-fungi interactions in Marchantia polymorpha are associated with horizontal gene transfer and terpene metabolism.
research
 6 / 15 Mp1g00650 MpLOX5 MpLOX1 MpPPO3 MpRLK-Pelle_RLCK-XII-1 Mp2g20730 MpWRKY7 MpNBS-LRR11 LURP1 MpPAL7 MpWRKY3 Mp5g15200 +9 more
Pietrykowska, H., et al.
Plant Molecular Biology
2023 		Conserved and non-conserved RNA–target modules in plants- lessons for a better understanding of Marchantia development.
review
 0 / 20 MpDCL3 MpFRH1 MpARF3 MpSPL1 MpSPL2 MpSUF MpFGMYB MpRKD MpRSL1 MpBNB MpARF2 MpSUK1 +8 more
Flores-Sandoval, E., et al.
Frontiers in Plant Science
2018b 		Co-expression and Transcriptome Analysis of Marchantia polymorpha Transcription Factors Supports Class C ARFs as Independent Actors of an Ancient Auxin Regulatory Module.
research
 2 / 18 MpARF3 MpWIP MpSPL1 MpSPL2 MpARF1 MpTCP2 MpGRAS8 MpMIR160 MpGRAS4 MpNAC1 MpB3-8 MpRAV +8 more
Goto-Yamada, S., et al.
Frontiers in Cell and Developmental Biology
2022 		Image-Based Analysis Revealing the Molecular Mechanism of Peroxisome Dynamics in Plants.
review
 0 / 19 MpPEX4 MpPEX10 MpPEX11b MpPEX11a MpAPEM9 MpPEX22 MpPEX6 MpPEX13 MpPEX2 MpPEX12 MpPEX1 MpPEX16 +7 more
Alisha A, Jarmolowski A, Szweykowska-Kulinska Z, Sierocka I.
The Plant journal : for cell and molecular biology
2026 		The SPL-family transcription factor MpSPL3 orchestrates the proper regulation of vegetative and reproductive programs in Marchantia polymorpha.
research
 13 / 6 MpMAX2 MpARF3 MpSPL1 MpSPL3 MpMIR160 MpCKI1 MpKAI2A MpLRL MpBZR3 MpMIR529C MpSMXL MpBNB +7 more
Suzuki, H., et al.
Plant Cell
2023 		Auxin signaling is essential for organogenesis but not for cell survival in the liverwort Marchantia polymorpha.
research
 6 / 13 MpARF3 MpWIP MpARF1 MpncARF MpNAC1 MpLRL MpC2HDZ MpR2R3-MYB21 MpRSL1 MpARF2 MpR2R3-MYB20 MpERF20 +7 more
Zhou Y, Hamiaux C, Andre CM, Cooney JM, Schwinn KE, van Klink JW, Bowman JL, Davies KM, Albert NW.
The New phytologist
2025 		Protection of naringenin chalcone by a pathogenesis-related 10 protein promotes flavonoid biosynthesis in Marchantia polymorpha.
research
 3 / 15 MpHDAC1 MpPAL1 MpDBR MpAS1 MpPAL-like2 MpCHIL MpPR10.3 MpC4H MpCHI MpSTCS1A MpPR10.5 MpC4H3 +6 more
Takizawa, R., et al.
Plant & Cell Physiology 62 528-537
2021a 		62 Fungal-Type Terpene Synthases in Marchantia polymorpha Are Involved in Sesquiterpene Biosynthesis in Oil Body Cells.
research
 10 / 7 MpMTPSL9 MpFTPSL7 MpFTPSL8 MpEF1 MpMTPSL5 MpFTPSL2 MpFTPSL1 MpFTPSL3 MpDXR1 MpFTPSL5 MpFTPSL4 MpFTPSL10 +5 more
Kulshrestha, S., et al.
Journal of Experimental Botany
2022 		Stress, senescence, and specialized metabolites in bryophytes.
review
 0 / 16 MpSGRL MpNYE1 MpACRE132 MpNAC1 MpC1HDZ MpPLATZ1 MpMYB02 MpWRKY7 MpNLA MpNAC3 MpNAC4 MpR2R3-MYB14 +4 more
Ros-Moner, E., et al.
Nature Communications
2024 		Conservation of molecular responses upon viral infection in the non- vascular plant Marchantia polymorpha.
research
 3 / 13 MpDCL3 MpNYE1 MpNAC1 MpTOM1 MpWRKY7 MpR2R3-MYB14 MpNRPE1b MpNAC7 MpGDI2 MpJAZ MpDCL1b MpACTIN7 +4 more
Pietrykowska, H., et al.
Journal of Experimental Botany
2022 		Biogenesis, conservation, and function of miRNA in liverworts.
review
 0 / 16 MpFRH1 MpARF3 MpSPL1 MpSPL2 MpAGO1 MpSE MpAGO4a MpC3HDZ MpHST1 MpHEN1 MpRSL1 MpCRM1 +4 more
Kolkas, H., et al.
Frontiers in Plant Science
2022 		The Cell Wall Proteome of Marchantia polymorpha Reveals Specificities Compared to Those of Flowering Plants.
research
 16 / 0 Mp1g11940 Mp2g01420 Mp2g19430 Mp3g01170 Mp3g03140 Mp3g21190 MpPrx95 Mp5g14440 Mp5g15320 Mp5g18380 Mp5g21460 Mp6g20430 +4 more
Huang, M. D., et al.
BMC Plant Biology
2023 		The revealing of a novel lipid transfer protein lineage in green algae.
research
 0 / 16 MpLTPG4 MpLTPG2 MpLTPG3 MpLTPd8 MpLTPG1 MpLTPd1 MpLTPd10 MpLTPd11 MpLTPd12 MpLTPd2 MpLTPd3 MpLTPd4 +4 more
Lim, C. J., et al.
New Phytologist
2024 		MpPUB9, a U-box E3 ubiquitin ligase, acts as a positive regulator by promoting the turnover of MpEXO70.1 under high salinity in Marchantia polymorpha.
research
 4 / 11 MpMAX2 MpEXO70.3 MpEXO70.2 MpKAI2B MpKAI2A Mp4g08580 MpPIN2 MpCOP1 MpEXO70.1 MpNOP1 MpCPS MpPUB10 +3 more
Chen X, Feng H, Liu M, Cai J, Sarwar R, Li X, Zhang M, Li X, Lin X, Guo Z, Hu J, Yang S, Wang L, Niu X, Wang G, Tang B, Wang S, Qin Y, Cheng Y.
Physiologia plantarum
2025 		Genome-Wide Identification and Evolution of Core Cell Cycle Genes in Marchantia polymorpha: Insights Into Redundancy, Stress, and Functional Evolution.
research
 0 / 15 MpCYCC1;1 MpCKS1 MpCYCH;1 MpCYCB_2 MpCDKA MpRLK-Pelle_DLSV MpKRP MpCYCH;2 MpCDKC;2 MpCDKC;1 MpCDKA;2 MpCDKB1 +3 more
Kumar, S., et al.
Plant Cell
2016 		Molecular diversity of terpene synthases in the liverwort Marchantia polymorpha.
research
 12 / 3 MpMTPSL9 MpMTPSL2 MpFTPSL8 MpMTPSL3 MpMTPSL8 MpMTPSL5 MpMTPSL1 MpMTPSL4 MpFTPSL2 MpCPS MpDTPS1 MpDTPS2 +3 more
Pullagurla, N. J., et al.
Plant Physiology
2025 		Orchestration of phosphate homeostasis by the ITPK1-type inositol phosphate kinase in the liverwort Marchantia polymorpha.
research
 2 / 13 MpITPK4 MpSPX MpMATE1 MpITPK1 MpEF1 MpAPT MpCLE2 MpPHO1a MpVIH MpDGDG MpMYB14 MpPHO1 +3 more
Liang, Y., et al.
Science Advances
2022 		The wound- activated ERF15 transcription factor drives Marchantia polymorpha regeneration by activating an oxylipin biosynthesis feedback loop.
research
 12 / 3 MpLOX1 MpCOI1 MpASA1 MpEF1 MpERF20 MpAOS2 MpDIR42 MpDIR38 MpLOX4 MpJAZ MpACTIN7 MpDIR17 +3 more
Higo, A., et al.
Nature Communications
2018 		Transcription factor DUO1 generated by neofunctionalization is associated with evolution of sperm differentiation in plants.
research
 12 / 2 MpCEN1 MpMID MpDUO1 MpRKD MpR2R3-MYB21 MpTUB4 MpPRM MpGCS1 MpGEX2 MpTUA5 MpDAZ1 MpLC7 +2 more
Wang, M., et al.
Communications Biology
2024a 		The phosphorylated pathway of serine biosynthesis affects sperm, embryo, and sporophyte development, and metabolism in Marchantia polymorpha.
research
 2 / 12 MpCEN1 MpSHMT MpMID MpDUO1 MpPSAT MpGDH MpPSP MpRKD MpPRM MpTUA5 MpDAZ1 MpLC7 +2 more
Marchetti, F., et al.
Plant Cell and Environment
2021 		Heat stress in Marchantia polymorpha- Sensing and mechanisms underlying a dynamic response.
research
 0 / 14 MpARF3 MpCOI1 MpSIG5 MpHSF1 MpPHOT MpTCP1 MpHSF2 MpCNGC MpERECTA MpHAT MpHSP17.8A1 MpHSR +2 more
Minamino, N., et al.
Plant and Cell Physiology
2018 		RAB GTPases in the basal land plant Marchantia polymorpha.
research
 3 / 11 MpRAB5 MpRAB21 MpRAB1A MpSYP6A MpEF1 MpRAB2B MpRAB23 MpRAB6 MpRAB18 MpRAB2A MpARA6 MpRAB7 +2 more
Spinedi, N., et al.
Plants
2021 		ROS-Scavenging Enzymes as an Antioxidant Response to High Concentration of Anthracene in the Liverwort Marchantia polymorpha L.
research
 0 / 14 MpDHAR1 MpBHLH4 MpPOD26 MpERF20 MpCAT4 MpPOD112 MpPOD114 MpPOD115 MpPOD122 MpGST27 MpPOD159 MpPOD161 +2 more
Liu, W., et al.
Cell Reports
2024a 		MpANT regulates meristem development in Marchantia polymorpha.
research
 2 / 12 MpARF1 MpCLV1 MpAUX1 MpPIN1 MpTAA MpCLE2 MpGRAS9 MpCLE1 MpACTIN7 MpIDDL4 MpRGI2 MpYUC2 +2 more
Katayose, A., et al.
Plant and Cell Physiology
2021 		Distinct Functions of Ethylene and ACC in the Basal Land Plant Marchantia polymorpha.
research
 2 / 12 MpERF1 MpPIP1 MpEF1 MpPIP2 MpHLS1 MpERF21 MpACS1 MpGST2 MpWDL MpCAT1 MpACSL1 MpACSL2 +2 more
Jahan, A., et al.
Frontiers in Plant Science
2022 		Differential regulations of abscisic acid-induced desiccation tolerance and vegetative dormancy by group B3 Raf kinases in liverworts.
research
 10 / 4 MpBZIP12 MpEF1 MpLEAL5 MpLEAL1 MpLEAL6 MpB3-6 MpMAPKKK12 MpLEAL3 MpMAPKKK16 MpCTR2 MpCTR1 MpCTR3 +2 more
Zenker S, Wulf D, Meierhenrich A, Viehoever P, Becker S, Eisenhut M, Stracke R, Weisshaar B, Brautigam A.
Plant Physiology
2025 		Many transcription factor families have evolutionarily conserved binding motifs in plants.
research
 12 / 1 MpGATA2 MpBHLH27 MpWRKY11 MpRVE MpC1HDZ Mp1R-MYB8 MpDEL1 MpMADS2 MpNAC3 MpBHLH44 Mp1R-MYB7 MpWRKY14 +1 more
Lin, P. C., et al.
Plant and Cell Physiology
2016 		Identification of miRNAs and Their Targets in the Liverwort Marchantia polymorpha by Integrating RNA-Seq and Degradome Analyses.
research
 0 / 13 MpARF3 MpAGO1 MpMADS2 MpMADS1 MpPHOT MpPPR_66 MpAGO4 MpC3HDZ1 MpDCL1 MpDRB2 MpNRPD2A MpRDR6 +1 more
Romani, F., et al.
New Phytologist
2021 		Molecular mechanisms involved in functional macroevolution of plant transcription factors.
research
 0 / 13 MpARF3 MpARF1 MpDUO1 MpFGMYB MpBHLH12 MpC1HDZ MpMYB02 MpTMO5 MpBNB MpARF2 MpERF13 MpLHW +1 more
Kanazawa, T., et al.
Frontiers in Plant Science
2022 		Normal oil body formation in Marchantia polymorpha requires functional coat protein complex I proteins.
research
 3 / 10 MpRAB5 MpGOS11 MpSEC28 MpSYP4 MpSYP13B MpC1HDZ MpAPT MpSYP12B MpERF13 MpERD2 MpIDH1 MpRET1 +1 more
Zhou C, Yang T, Cai M, Cui H, Yu F, Liu H, Fu J.
BMC Genomics
2025 		Comprehensive analysis of the INDETERMINATE DOMAIN (IDD) gene family in Marchantia polymorpha brings new insight into evolutionary developmental biology.
research
 7 / 6 MpWIP MpGRAS3 MpGRAS8 MpEF1a MpIDD1 MpIDD2 MpIDD3 MpIDD4 MpIDD5 MpIDD6 MpIDD7 MpSCR +1 more
Yotsui, I., et al.
Current Biology
2023 		LysM-mediated signaling in Marchantia polymorpha highlights the conservation of pattern-triggered immunity in land plants.
research
 3 / 10 MpPAL1 MpMPK1 MpLRR-RLK MpRBOH2 MpEF1 MpLYK1 MpPHOT MpWRKY3 MpLYP MpACT1 MpLYK2 MpLYR +1 more
Lagercrantz, U., et al.
New Phytologist
2021 		DE- ETIOLATED1 has a role in the circadian clock of the liverwort Marchantia polymorpha.
research
 1 / 12 MpELF3 MpRVE MpPRR MpTOC1 MpLUX MpWDR2 MpWDR1 MpBBX1 MpACTIN7 MpDET1 MpCDF1 MpEFL +1 more
Jobe TO, Junior CGL, Stolze SC, Stephan L, Westermann J, Harzen A, Hülskamp M, Nakagami H, Boisson-Dernier A.
Plant & cell physiology
2026 		Multi-omics analyses of mutants for Marchantia polymorpha FERONIA and MARIS reveal a link between cell wall integrity and abscisic acid responses.
research
 2 / 11 MpSNRK2A MpABA1 MpNCED MpMFT MpABI5A MpCYP707A MpFER MpB3-6 MpMRI MpPYL1 MpAPT3 MpDEHYDRIN +1 more
Saint-Marcoux, D., et al.
PLoS ONE
2015 		Identification of Reference Genes for Real- Time Quantitative PCR Experiments in the Liverwort Marchantia polymorpha.
research
 0 / 13 MpEF1 MpAPT MpSAND MpACT MpCUL MpELF5 MpGAPC1 MpH3 MpNRT2 MpPEX MpPHT1 MpTUB8 +1 more
Gimenez-Ibanez, S., et al.
Current Biology
2019 		An Evolutionarily Ancient Immune System Governs the Interactions between Pseudomonas syringae and an Early-Diverging Land Plant Lineage.
research
 3 / 9 MpPAL MpTHIO MpAIG2 MpICS MpCOI1 MpPR1 MpDIR33 MpCML42 MpWRKY9 MpBAK1 MpCHS MpPR2
Fu, J., et al.
Plant and Cell Pysiology
2024 		The PLETHORA Homolog in Marchantia polymorpha is Essential for Meristem Maintenance, Developmental Progression, and Redox Homeostasis.
research
 1 / 11 MpWIP MpWOX MpCLV1 MpLRL MpRSL1 MpEF1 MpTUA1 MpCLE1 MpTCP1 MpYUC2 MpAP2L1 MpNOP1
Lagerkrantz, U., et al.
Scientific Reports
2020 		Nyctinastic thallus movement in the liverwort Marchantia polymorpha is regulated by a circadian clock.
research
 7 / 5 MpELF3 MpARF1 MpGI MpELF4 MpRVE MpPRR MpTOC1 MpSHI MpLUX MpTAA MpYUC2 MpZTL
Furuya, T., et al.
Nature Plants
2024 		A non-canonical BZR/BES transcription factor regulates the development of haploid reproductive organs in Marchantia polymorpha.
research
 1 / 11 MpDUO1 MpBZR2 MpBZR3 MpRKD MpBNB MpEF1 MpDAZ1 MpBELL5 MpLC7 MpBZR1 MpBES1 MpGSK
Dierschke, T., et al.
eLife
2021 		Gamete expression of TALE class HD genes activates the diploid sporophyte program in Marchantia polymorpha.
research
 10 / 2 MpFGMYB MpKNOX1b MpBELL2 MpKNOX1a MpSUK1 MpKNOX1 MpBELL5 MpE(z)1 MpKNOX2 MpBELL3 MpBELL4 MpBELL1
Kawamura, S., et al.
Plant & Cell Physiology
2022 		MarpolBase Expression- A Web-based, Comprehensive Platform for Visualization and Analysis of Transcriptomes in the Liverwort Marchantia polymorpha.
research
 0 / 12 MpTPS3 MpPHY MpTPS7 MpC1HDZ MpMYB02 MpMTPSL2 MpSYP12B MpFTPSL2 MpFTPSL3 MpERF13 MpABCG1 MpCPT
Kneeshaw, S., et al.
PNAS
2022 		Ligand diversity contributes to the full activation of the jasmonate pathway in Marchantia polymorpha.
research
 5 / 7 MpCYP94-like MpCOI1 MpFAD5 MpDES5 MpEF1 MpAPT MpLOX4 MpPATATIN MpELO1 MpJAZ MpDES6 Mp7g06530
Schmid, M. W., et al.
Genome Biology
2018 		Extensive epigenetic reprogramming during the life cycle of Marchantia polymorpha.
research
 9 / 2 MpDRMa MpROS1a MpDRMb MpPIWIb MpPIWIa MpCMTa MpACTIN7 MpMET MpCMTb MpAPT3 MpHEN
Krishnamoorthi, S., et al.
Cell Reports
2024 		Hyperspectral imaging of liverwort Marchantia polymorpha identifies MpWRKY10 as a key regulator defining Foliar pigmentation patterns.
research
 2 / 9 MpWRKY6 MpBHLH12 MpPPO2 MpR2R3-MYB14 MpC4H MpACTIN7 MpWRKY10 MpPAL3 MpWRKY2 MpCHS12 MpMYB6
Furumoto, T., et al.
Plant & Cell Physiology
2024 		Thermospermine Is an Evolutionarily Ancestral Phytohormone Required for Organ Development and Stress Responses in Marchantia Polymorpha.
research
 1 / 10 Mp1g09210 MpOMT8 MpEF1 Mp5g07800 MpBHLH42 MpACTIN7 Mp7g06480 Mp7g07900 Mp8g16710 MpACL5 MpTSPMS
Lagercrantz, U., et al.
PLoS ONE
2022 		PIF- independent regulation of growth by an evening complex in the liverwort Marchantia polymorpha.
research
 3 / 8 MpWIP MpELF3 MpMIR160 MpABCB3 MpPIF MpPIN1 MpLUX MpTAA MpGH3A MpYUC2 MpEFL
Linde, A.-M., et al.
New Phytologist
2017 		Early evolution of the land plant circadian clock.
research
 8 / 3 MpELF3 MpGI MpTUB2 MpRVE MpPRR MpTOC1 MpFKF MpEF1 MpLUX MpACT MpEFL
Roetzer J, Asper B, Meir Z, Edelbacher N, Merai Z, Datta S, Dolan L.
Current biology : CB
2026 		Antagonism between blue- and red-light signaling controls thallus flatness in Marchantia polymorpha.
research
 4 / 7 MpHY5 MpBHLH4 MpPHY MpSIG5 MpFKF MpBBX3 MpBBX2 MpPHOT MpBBX1 MpCOP1 MpBBX5
Takaoka, Y., et al.
PNAS Nexus
2024 		A structure-redesigned intrinsically disordered peptide that selectively inhibits a plant transcription factor in jasmonate signaling.
research
 1 / 10 MpERF1 MpCOI1 MpEF1 MpDIR39 MpPATATIN MpERF21 MpEIN3 MpMYC MpMYC-X MpMYC-Y MpbHLH62
Liang, W., et al.
Plant Physiology
2024 		Dinor-12-oxo-phytodienoic acid conjugation with amino acids inhibits its phytohormone bioactivity in Marchantia polymorpha.
research
 1 / 10 MpILR MpGH3B MpCOI1 MpFAD5 MpDIR33 MpJAZ MpGH3A MpACTIN7 MpDES6 MpHBLH4 MpMYCY
Beaulieu, C., et al.
Nature Genetics
2025 		The Marchantia pangenome reveals ancient mechanisms of plant adaptation to the environment.
research
 0 / 11 MpC1HDZ MpNBS-LRR11 MpPOD128 MpGCAM1 MpTPS1 MpTPS4 Mp8g04680 Mp8g04690 MpCSLD10 MpFERONIA MpTHESEUS
Marron, A. O., et al.
The Plant Journal
2023 		An enhancer trap system to track developmental dynamics in Marchantia polymorpha.
research
 0 / 11 MpRSL1 MpPIN1 MpWRKY13 Mp4g00190 MpWRKY12 Mp4g04240 Mp1R-MYB17 Mp4g21310 Mp4g21320 MpERF20 MpYUC2
Bonnot, C., et al.
New Phytologist
2017 		Functional PTB phosphate transporters are present in streptophyte algae and early diverging land plants.
research
 2 / 9 MpSAND MpPTB4 MpPTB6 MpPTB2 MpPTB3 MpPTB1 MpPTB5 MpPTB8 MpPTB7 MpACT MpPHT2-1
Montgomery, S. A., et al.
Current Biology
2020 		Chromatin Organization in Early Land Plants Reveals an Ancestral Association between H3K27me3, Transposons, and Constitutive Heterochromatin.
research
 0 / 11 Mp4g13200 Mp4g13270 Mp4g13330 Mp5g10710 Mp5g10760 Mp5g10780 Mp5g10790 Mp8g14490 Mp8g14520 Mp8g14560 Mp8g14610
Komatsu, A., et al.
Nature Communications
2025 		KAI2-dependent signaling controls vegetative reproduction in Marchantia polymorpha through activation of LOG- mediated cytokinin synthesis (14).
research
 6 / 4 MpLOG MpMAX2 MpKAI2B MpKAI2A MpSMXL MpAPT MpDLP1 MpACTIN7 MpEXL9
Furumizu, C., et al.
Plant Cell
2021 		The sequenced genomes of nonflowering land plants reveal the innovative evolutionary history of peptide signaling.
review
 0 / 10 MpRGI-like MpTDR MpPSK MpCLE2 MpCLE1 MpRGF MpIDA1 MpCIF MpHSL2 MpIDA
Carella, P., et al.
Current Biology
2024 		Conserved Biochemical Defenses Underpin Host Responses to Oomycete Infection in an Early- Divergent Land Plant Lineage.
research
 1 / 9 MpPAL MpCHS1 MpSYP13B MpEF1 MpDIR33 MpR2R3-MYB14 MpPR9l MpC4H MpPR6a MpACT
Koebke, E., et al.
Frontiers in Plant Science
2022 		Functional analysis of the BEige and Chediak-Higashi domain gene MpSPIRRIG in Marchantia polymorpha.
research
 2 / 8 MpLIP5 MpRAB5 MpSPI MpSPIRRIG MpACTIN7 MpARA6 MpSKD1 MpDCP2 MpAPT3 MpDCP1
Westermann, J., et al.
Frontiers in Plant Science
2020 		A Comprehensive Toolkit for Quick and Easy Visualization of Marker Proteins, Protein–Protein Interactions and Cell Morphology in Marchantia polymorpha.
research
 0 / 10 MpLIP5 MpRAB5 MpEF1 MpFER MpSYP13A MpMRI MpARA6 MpSKD1 MpDCP2 MpDCP1
Hernández-García, J., et al.
Nature Communications
2024a 		Evolutionary origins and functional diversification of Auxin Response Factors.
research
 5 / 5 MpARF3 MpWIP MpARF1 MpBromo4 MpRAV MpEF1 MpSAND MpARF2 MpIAA MpWIP1
Tsuzuki, M., et al.
Current Biology
2019 		An Early Arising Role of the MicroRNA156-529-SPL Module in Reproductive Development Revealed by the Liverwort Marchantia polymorpha.
research
 2 / 8 MpARF3 MpSPL1 MpSPL2 MpPHY MpMIR529C MpPIF MpBNB MpEF1 MpACT MpMIR529a
Hong, S.-F., et al.
Plant & Cell Physiology
2024 		Molecular Insights into MpAGO1 and Its Regulatory miRNA, miR11707, in the High-Temperature Acclimation of Marchantia polymorpha.
research
 1 / 9 MpARF3 MpWIP MpSPL1 MpAGO1 MpAGO4a MpExpansin32 MpGH3A MpAGO4b MpAGO9 MpTAS3
Kanesaka, Y., et al.
Frontiers in Plant Science
2023 		Circadian clock does not play an essential role in daylength measurement for growth-phase transition in Marchantia polymorpha.
research
 2 / 8 MpSPL2 MpGI MpCDF MpPRR MpTOC1 MpFKF MpPIF MpGRAS6 MpPAPK1.2 MpKANADI
Eklund, D. M., et al.
Current Biology
2018 		An Evolutionarily Conserved Abscisic Acid Signaling Pathway Regulates Dormancy in the Liverwort Marchantia polymorpha.
research
 3 / 7 MpARF1 MpMFT MpEF1 MpB3-6 MpLEA1 MpDHN1 MpPYL1 MpABI1B MpABI1 MpABI3B
Levins, J., et al.
New Phytologist 10.1111/nph.20454
2025 		Evolution of sexual systems and regressive evolution in Riccia.
research
 0 / 10 MpDUO1 MpFGMYB MpRKD MpBNB MpKNOX1 MpKNOX2 MpBELL1 MpBPCU MpBPCV MpSUF
Lo, J. C., et al.
New Phytologist
2016 		Evolutionary analysis of iron (Fe) acquisition system in Marchantia polymorpha.
research
 1 / 9 MpFRO1 MpZIP1 MpFIT1 MpZIP4 MpFRO2 MpZIP3 MpFIT2 MpZIP2 MpFRO3 MpZIP5
Aki, S. S., et al.
Scientific Reports
2022 		R2R3-MYB transcription factor GEMMA CUP-ASSOCIATED MYB1 mediates the cytokinin signal to achieve proper organ development in Marchantia polymorpha.
research
 3 / 7 MpIPT1 MpGH3B MpRRA MpEF1 MpRRB MpCKX1 MpCKX2 MpGCAM1 MpPIN3 MpIPT2
Kajiwara, T., et al.
Plant & Cell Physiology
2024 		Transcription of the Antisense Long Non-Coding RNA, SUPPRESSOR OF FEMINIZATION, Represses Expression of the Female-Promoting Gene FEMALE GAMETOPHYTE MYB in the Liverwort Marchantia polymorpha.
research
 2 / 8 MpSUF MpFGMYB MpEF1 MpSUK1 MpKNOX1 MpBPCU MpVg00090 MpVg00320 MpVg00700 MpVg00785
Tolopka, J. I., et al.
Plants
2024 		Environmental Pollutant Anthracene Induces ABA-Dependent Transgenerational Effects on Gemmae Dormancy in Marchantia polymorpha.
research
 2 / 8 MpABA1 MpPYL2 MpDHN2 MpB3-6 MpDHN1 MpPYL5 MpPYL1 MpPYL4 MpACT MpPYL3
Kim T, Alvarez JC, Rana D, Preciado J, Liu T, Begcy K.
Plant & cell physiology
2025 		Evolution of NAC transcription factors from early land plants to domesticated crops.
research
 9 / 1 MpNAC1 MpNAC3 MpNAC4 MpJIN MpNAC9 MpNAC2 MpNAC7 MpNAC8 MpACTIN7 MpNAC5
Komatsu, A., et al.
Current Biology
2023 		Control of vegetative reproduction in Marchantia polymorpha by the KAI2-ligand signaling pathway.
research
 4 / 5 MpMAX2 MpKAI2B MpKAI2A MpSMXL MpDLP1 MpCKX2 MpCLE2 MpACTIN7 MpKAI2
Redkar, A., et al.
New Phytologist
2022 		Marchantia polymorpha model reveals conserved infection mechanisms in the vascular wilt fungal pathogen Fusarium oxysporum.
research
 0 / 9 MpPAL MpTHIO MpPR4 MpEF1 MpCML42 MpWRKY9 MpEF1a MpMyb14 MpPR9
Kato, H., et al.
New Phytologist
2020b 		Gemma cup and gemma development in Marchantia polymorpha.
research
 0 / 9 MpFRH1 MpARF3 MpARF1 MpRRA MpRKD MpRSL1 MpRRB MpCKX2 MpIAA
Das, S., et al.
Plant Communications
2024 		Quantitative imaging reveals the role of MpARF proteasomal degradation during gemma germination.
research
 6 / 3 MpARF3 MpARF1 MpncARF MpEF1 MpSAND MpARF2 MpTIR1 MpIAA MpncIAA
Ishida, S., et al.
Plant & Cell Physiology
2022 		Diminished Auxin Signaling Triggers Cellular Reprogramming by Inducing a Regeneration Factor in the Liverwort Marchantia polymorpha.
research
 1 / 8 MpWIP MpARF1 MpEF1 MpERF9 MpERF20 MpTAA MpERF21 MpERF2 MpYUC2
Yan Y, Mellüh J, Mecchia MA, Jeon HW, Melkonian K, Holzberger C, Harzen A, Stolze SC, Neuman U, Franzen R, Hirakawa Y, Caño Delgado AI, Nakagami H.
Current biology : CB
2025 		Conserved role of the SERK-BIR module in development and immunity across land plants.
research
 2 / 7 MpTDR MpSYP13B MpRLK-Pelle_RLCK-IV MpRGI1 MpMAPKKK7 MpSUB MpPHOT MpSERK MpBIR
Davies, K. M., et al.
Philosophical Transactions of the Royal Society B
2024 		The evolution of flavonoid biosynthesis.
review
 0 / 9 MpPKS5 MpHY5 MpBHLH12 MpAS1 Mp3g07420 MpDIR2 MpMYB02 MpDIR27 MpR2R3-MYB14
Inoue K, Kotani K, Yamaoka S, Araki T.
STAR protocols
2026 		Protocol for chromatin immunoprecipitation using isolated antheridia of Marchantia polymorpha.
research
 3 / 6 MpDUO1 MpTUA2 MpTUA4 MpTUA7 MpTUB4 MpTUA1 MpTUA5 MpTUA6 MpTUA3
Mecchia, M. A., et al.
Current Biology
2021 		The BES1/BZR1-family transcription factor MpBES1 regulates cell division and differentiation in Marchantia polymorpha
research
 1 / 8 MpBZR2 MpCYCD_2 MpPRR MpEF1 Mp3g25260 MpTCP1 Mp7g06850 MpGSK MpUBQ
Iwasaki, M., et al.
Current Biology
2021a 		Identification of sex-determining factor in Marchantia revealed unique evolution of the genes linked to sex chromosomes in haploid system
research
 4 / 5 MpSUF MpFGMYB MpPRM MpEF1 Mp5g13880 MpLC7 Mp7g02820 MpBPCU MpBPCV
Zhu, T.-T., et al.
New Phytologist
2022 		Interaction of PKR with STCS1- an indispensable step in the biosynthesis of lunularic acid in Marchantia polymorpha.
research
 2 / 7 MpCHS1 MpPKS11 MpPKS21 MpPKS10 MpSTCS1A MpDABB1 MpPKR MpPKR1 MpPKR2
Liao, J., et al.
New Phytologist
2023 		Insights into cryptochrome modulation of ABA signaling to mediate dormancy regulation in Marchantia polymorpha.
research
 1 / 8 MpMFT MpPHY MpCRY MpBZIP12 MpPIF MpAPT MpB3-6 MpLEA1 MpDHN1
Romani, F., et al.
Current Biology
2020 		Oil Body Formation in Marchantia polymorpha Is Controlled by MpC1HDZ and Serves as a Defense against Arthropod Herbivores.
research
 1 / 8 MpC1HDZ MpMYB02 MpCPT5 MpDXS2 MpSYP12B MpERF13 MpABCG1 MpMYB14 MpU6
Kameoka, H., et al.
Current Biology
2023 		DIENELACTONE HYDROLASE LIKE PROTEIN1 negatively regulates the KAI2- ligand pathway in Marchantia polymorpha.
research
 4 / 4 MpLOG MpMAX2 MpKAI2B MpKAI2A MpSMXL MpDLP1 Mp6g04540 MpACTIN1
Aguilar-Cruz, A., et al.
New Phytologist
2019 		DNA methylation in Marchantia polymorpha.
research
 0 / 8 MpDRMa MpDCL3 MpNRPD1 MpPIWIb MpPIWIa MpNRPE1a MpCMTa MpMET1
Dong, Y., et al.
Nature Plants
2024 		Co-option of plant gene regulatory network in nutrient responses during terrestrialization.
research
 3 / 5 MpHD9 MpCSD MpRRA MpRRB MpERF20 MpAP2L3 MpACTIN7 Mp1RMYB17
Lin, S.-S., et al.
New Phytologist
2018 		MicroRNAs in Marchantia polymorpha.
review
 0 / 8 MpDCL3 MpARF3 MpAGO1 MpHEN1 MpARF2 MpDCL4 MpDCL1a MpTAS3
Frangedakis, E., et al.
New Phytologist
2020 		The hornworts- morphology, evolution and development.
review
 0 / 8 MpFRH1 MpTDR MpCLV1 MpCLE2 MpCLE1 MpBELL3 MpBELL4 MpBELL1
Flores-Sandoval, E., et al.
New Phytologist
2018a 		Class C ARFs evolved before the origin of land plants and antagonize differentiation and developmental transitions in Marchantia polymorpha.
research
 1 / 7 MpARF3 MpARF1 MpMIR160 MpSHI MpARF2 MpIAA MpACT1 MpTPL
Kato, H., et al.
Plant and Cell Physiology
2017a 		The Roles of the Sole Activator- Type Auxin Response Factor in Pattern Formation of Marchantia polymorpha.
research
 1 / 7 MpARF3 MpARF1 MpEF1 MpARF2 MpTIR1 MpIAA MpGH3A MpYUCCA2
Li, D., et al.
Nature Plants
2020a 		Ethylene-independent functions of the ethylene precursor ACC in Marchantia polymorpha.
research
 4 / 4 MpETR1 MpACS2 MpEIN2 MpETR2 MpACS1 MpEIN3 MpCTR1 MpU6
Hirakawa, Y., et al.
Current Biology
2020 		Induction of Multichotomous Branching by CLAVATA Peptide in Marchantia polymorpha.
research
 3 / 5 MpTDR MpWOX MpCLV1 MpEF1 MpCLE2 MpCLE1 MpYUC2 MpCLV3
Rong, D., et al.
PNAS
2022 		ROP signaling regulates spatial pattern of cell division and specification of meristem notch.
research
 2 / 6 MpARF1 MpEF1 MpROP MpYUC2 MpREN MpROPGEF MpSPK1 MpSWAP70
Zhang, L., et al.
International Journal of Molecular Sciences
2022b 		Functions of COP1/SPA E3 Ubiquitin Ligase Mediated by MpCRY in the Liverwort Marchantia Polymorpha under Blue Light.
research
 4 / 4 MpHY5 MpUVR8 MpPHY MpCRY MpFKF MpSPA1 MpPHOT MpCOP1
Laurent, F., et al.
PLoS Genetics
2025 		Inositol pyrophosphate catabolism by three families of phosphatases regulates plant growth and development.
research
 3 / 5 MpIPMK MpSPX MpPHT1;4 MpITPK1 MpPFA-DSP1 MpPHO1;H4 MpDDP1 MpVIH
Aki, S. S., et al.
Plant & Cell Physiology
2019a 		Cytokinin Signaling Is Essential for Organ Formation in Marchantia polymorpha.
research
 2 / 6 MpCHK1 MpCRF MpRRA MpEF1 MpRRB MpCKX2 MpCHK2 MpHPT
Kongsted TE, Romani F, Airoldi CA, Haseloff J, Glover BJ.
Current biology : CB
2026 		Replicated repurposing of an ancestral transcriptional complex in land plants.
research
 5 / 3 MpCDKA MpBHLH12 MpMYB02 MpWDR2 MpWDR1 MpWDR3 MpCYCD_1 MpMYB14
Frangedakis, E., et al.
Cell
2024 		MYB-related transcription factors control chloroplast biogenesis.
research
 2 / 6 MpRR-MYB2 MpRR-MYB5 MpGATA4 MpGARP8 MpDVR MpLHCB1 MpPORA MpUBE2
Kanno S, Fukumura H, Sato S, Moriya KC, Sakai Y, Ishizaki K.
The New phytologist
2026 		Rhizoid-mediated phosphate uptake and internal transport in the non-vascular plant Marchantia polymorpha.
research
 1 / 7 MpVPT MpRSL1 MpGUN5 MpHA MpPAP MpPHO1 MpPHT1 MpPTB
Carella, P., et al.
Proceedings of the National Academy of Sciences USA: doi/10.1073/pnas.1717900115
2018 		Phytophthora palmivora establishes tissue-specific intracellular infection structures in the earliest divergent land plant lineage.
research
 4 / 4 MpSYP13B MpEF1 MpDIR33 MpPR9l MpSYP13A MpRAB7 MpRAB11A MpACT
Ren, X., et al.
Plant Cell
2024 		The BNB–GLID module regulates germline fate determination in Marchantia polymorpha.
research
 2 / 6 MpLRL MpBZR3 Mp3g06700 MpGLID MpBNB MpEF1 MpDEL2 MpCAPE
Montgomery, S. A., et al.
eLife
2022 		Polycomb-mediated repression of paternal chromosomes maintains haploid dosage in diploid embryos of Marchantia.
research
 4 / 4 MpFIE MpE(z)2 MpE(z)1 MpE(z)3 MpEz2 MpEz3 MpMSI1 MpSu(z)12
Hisanaga, T., et al.
eLife
2021 		Deep evolutionary origin of gamete-directed zygote activation by KNOX/ BELL transcription factors in green plants.
research
 3 / 5 MpBELL2 MpKNOX1 MpSUN MpBELL5 MpECpro MpBELL3 MpBELL4 MpBELL1
Ferreira-Guerra M, Coleto-Alcudia V, Mora-Garcia S, I Cano-Delgado A.
Plant & cell physiology
2025 		The Evolutionary Journey of the Sterol Synthesis Pathways in Eukaryotes
research
 0 / 7 MpCYP710A16 MpDWF1-like MpDWF1 MpCYP710-like MpBES1 MpDWF5A MpDWF5B
Minamino, N., et al.
Development
2022 		Remodeling of organelles and microtubules during spermiogenesis in the liverwort Marchantia polymorpha.
research
 2 / 5 MpCEN1 MpDUO1 MpGOS11 MpSEC22 MpEF1 MpSYP12A MpVAMP71
Gutsche, N., et al.
New Phytologist
2024 		MpTGA, together with MpNPR, regulates sexual reproduction and independently affects oil body formation in Marchantia polymorpha.
research
 2 / 5 MpNPR MpTGA MpC1HDZ MpBNB MpEF1 MpAPT MpERF13
Kodama, K., et al.
Nature Communications
2022 		An ancestral function of strigolactones as symbiotic rhizosphere signals.
research
 2 / 5 MpMAX2 MpKAI2B MpKAI2A MpSMXL MpDLP1 MpCCD8 MpMAX1
Althoff, F., et al.
Fronteirs in Plant Science
2022 		Developmental Plasticity of the Amphibious Liverwort Riccia fluitans.
research
 0 / 7 MpFRH1 MpSBG9 MpWIP MpRSL1 MpEF1 MpNOP1 MpTUB1
Takahashi, G., et al.
Frontiers in Plant Science
2021 		An Evolutionarily Conserved Coreceptor Gene Is Essential for CLAVATA Signaling in Marchantia polymorpha.
research
 1 / 6 MpTDR MpCLV1 MpCLE2 MpCLE1 MpSERK MpCIK1 MpYUC2
Streubel, S., et al.
Current Biology
2023 		Meristem dormancy in Marchantia polymorpha is regulated by a liverwort-specific miRNA and a clade III SPL gene.
research
 2 / 5 MpSPL1 MpSPL2 MpSPL3 MpPHY MpPIF MpAPT MpSPL4
Santa María, G. E., et al.
Data in Brief
2018 		A survey of sequences of KT-HAK-KUP transporters in green algae and basal land plants.
research
 0 / 7 MapolHAK7 MapolHAK3 MapolHAK1 MapolHAK5 MapolHAK6 MapolHAK4 MapolHAK2
Woudenberg, S., et al.
Development
2024 		Analysis of auxin responses in the fern Ceratopteris richardii identifies the developmental phase as a major determinant for response properties.
research
 2 / 5 MpARF1 MpSAND MpARF2 MpTIR1 MpIAA MpAPT3 MpAPT7
Sugano, S. S., et al.
PLoS ONE
2018 		Efficient CRISPR/Cas9-based genome editing and its application to conditional genetic analysis in Marchantia polymorpha.
research
 3 / 4 MpARF1 MpMPK1 MpEF1 MpPHOT MpNOP1 MpHSP17.8A1 MpU6-1
Norizuki, T., et al.
Frontiers in Plant Science
2019 		Marchantia polymorpha, a New Model Plant for Autophagy Studies.
research
 4 / 3 MpATG5 MpATG8a MpATG7 MpATG8b MpATG2 MpATG18 MpATG8
Hung, Y.-L., et al.
Plant & Cell Physiology
2024 		Dual Regulation of Cytochrome P450 Gene Expression by Two Distinct Small RNAs, a Novel tasiRNA and miRNA, in Marchantia polymorpha.
research
 2 / 5 MpCYP78-like1 MpAGO1 MpCYP78A101 MpARF2 MpDCL4 MpTAS3 MpU6
Hashimoto-Sugimoto M, Norizuki T, Segami S, Ohta Y, Suetsugu N, Ueda T, Morita MT.
Journal of experimental botany
2025 		Amyloplasts are necessary for full gravitropism in thallus of Marchantia polymorpha.
research
 2 / 5 MpAPS1 MpAPL1 MpAPL3 MpPGM1 MpAPL2 MpPGM2 MpEF1α
Fu, Y., et al.
Journal of Integrative Plant Biology: doi: 10.1111/jipb.13867
2025 		Evidence for evolution of a new sex chromosome within the haploid-dominant Marchantiales plant lineage.
research
 3 / 4 MpSUF MpFGMYB MpUg00330 MpBPCU MpUg00040 MpUg00110 MpUg00290
Singh, S., et al.
Frontiers in Plant Science
2023 		The monoicous secondarily aquatic liverwort Ricciocarpos natans as a model within the radiation of derived Marchantiopsida.
research
 0 / 7 MpSNRK2A MpABA1 MpNCED MpCYP707A MpRSL1 MpAO MpPYL1
Iwakawa, H., et al.
Plant & Cell Physiology
2021 		Agrobacterium-Mediated Transient Transformation of Marchantia Liverworts.
research
 0 / 7 MpACRE132 MpNPSN1 MpTUB2 MpCOI1 MpEF1 MpCML42 MpWRKY9
Takahashi, G., et al.
Current Biology
2023 		Control of stem cell behavior by CLE- JINGASA signaling in the shoot apical meristem in Marchantia polymorpha.
research
 2 / 5 MpCLV1 MpAPT MpJIN MpCLE2 MpNAC5 MpCIK1 MpYUC2
Chini, A., et al.
Plant Physiology
2021 		A small molecule antagonizes jasmonic acid perception and auxin responses in vascular and nonvascular plants.
research
 3 / 4 MpBHLH4 MpCOI1 MpDIR33 MpPAT MpJAZ MpACT MpASK1
Bao, H., et al.
Current Biology
2024 		Conserved CKI1-mediated signaling is required for female germline specification in Marchantia polymorpha.
research
 3 / 4 MpCKI1 MpBNB MpEF1 MpRRB MpCKX2 MpGCAM1 MpHPT
Sasaki T, Ishizaki K, Motose H, Oda Y.
Current biology : CB
2025 		The conserved machinery of bipolar prospindle formation controls acentrosomal spindle orientation in land plants.
research
 2 / 5 MpTUB2 MpAUR MpCORD MpGIP1 MpKTN MpLTI6Ba MpTPX2
Shimojo, M., et al.
Planta
2023 		Phosphatidic acid phosphohydrolase modulates glycerolipid synthesis in Marchantia polymorpha and is crucial for growth under both nutrient-replete and -deficient conditions.
research
 1 / 6 MpSQD2 MpMGDG MpBTA1 MpPAH MpAPT MpDGD MpSQD
Kanazawa, T., et al.
Plant and Cell Physiology
2016 		SNARE Molecules in Marchantia polymorpha: Unique and Conserved Features of the Membrane Fusion Machinery.
research
 1 / 6 MpSEC22 MpSYP13B MpSYP12B MpSYP12A MpSYP13A MpVAMP71 MpVAMP72C
Jahan, A., et al.
Plant Physiology
2019 		Archetypal roles of an abscisic acid receptor in drought and sugar responses in liverworts.
research
 1 / 6 MpPYL2 MpEF1 MpLEAL1 MpDHN1 MpPYL1 MpABI1A MpPYL3
Melkonian, K., et al.
New Phytologist
2022a 		miniTurbo-based interactomics of two plasma membrane-localized SNARE proteins in Marchantia polymorpha.
research
 2 / 5 MpSYP13B MpNMCP MpSYP12B MpSYP12A MpSYP13A MpABI1 MpNEK1
Monte, I., et al.
Molecular Plant
2019 		A Single JAZ Repressor Controls the Jasmonate Pathway in Marchantia polymorpha.
research
 2 / 5 MpCOI1 MpAPT MpAOS2 MpJAZ MpDIR17 MpCHL MpACT
Peñuelas, M., et al.
Plant Cell
2019 		Jasmonate-Related MYC Transcription Factors Are Functionally Conserved in Marchantia polymorpha.
research
 3 / 4 MpCOI1 MpMED25 MpJAZ MpDIR17 MpMYC MpMYCX MpMYCY
Wang, N., et al.
Frontiers in Plant Science
2021b 		Characterization of a Plant Nuclear Matrix Constituent Protein in Liverwort.
research
 1 / 6 MpNMCP NEAP MpAOS2 MpTCP1 MpDIR17 MpCHL MpEF1alpha
Walker, J., et al.
Cell 188: doi: 10.1016/j.cell.2025.1003.1014
2025 		Extensive N4 cytosine methylation is essential for Marchantia sperm function.
research
 2 / 5 MpEF1 MpDNMT3b MpCMTa MpDN4MT1a MpDN4MT1b MpDN4MT1 MpROS1
Chang, G., et al.
Current Biology
2023 		Liverwort bHLH transcription factors and the origin of stomata in plants.
research
 3 / 4 MpEF1 MpBHLH11 MpEF1a MpFLP MpSCRM1 MpSCRM2 MpSMF
De la Concepcion JC, Duverge H, Kim Y, Julian J, Xu HD, Watt MN, Ikene SA, Bianchi A, Grujic N, Papareddy RK, Grishkovskaya I, Haselbach D, Murray DH, Clavel M, Irwin NAT, Dagdas Y.
Nature plants
2025 		Electrostatic changes enabled the diversification of an exocyst subunit via protein complex escape.
research
 7 / 0 MpExo70I MpExo70II MpExo70III MpExo84 MpSEC10 MpSEC15 MpSEC6
Yue Y, Sablok G, He X, Hyvönen J, Dong S, Potente G, Liu Y, Szövényi P.
Genome Biology
2026 		Genome assemblies of the liverwort Blasia pusilla uncover a well-defined pseudoautosomal region on homomorphic UV sex chromosomes.
research
 0 / 7 MpVg00340 MpVg00350 MpVg00440 MpVg00470 MpVg00970 MpVg00980 MpVg01150
Jeon, H.-W., et al.
New Phytologist
2024 		Contrasting and conserved roles of NPR pathways in diverged land plant lineages.
research
 1 / 5 MpNPR MpBHLH2 MpTGA MpPIF MpEF1 MpWRKY14
Hernandez-Muñoz, A., et al.
New Phytologist
2024 		Marchantia polymorpha GOLDEN2- LIKE transcriptional factor; a central regulator of chloroplast and plant vegetative development.
research
 2 / 4 MpMAX2 MpSUP MpSMXL MpGCAM1 MpACTIN7 MpGARP8
Mizuno, Y., et al.
The Plant Cell
2021 		Major components of the KARRIKIN INSENSITIVE2-dependent signaling pathway are conserved in the liverwort Marchantia polymorpha.
research
 4 / 2 MpMAX2 MpKAI2B MpKAI2A MpSMXL MpEF1 MpACT
Tsuzuki, M., et al.
Plant and Cell Physiology
2016 		Profiling and Characterization of Small RNAs in the Liverwort, Marchantia polymorpha, Belonging to the First Diverged Land Plants.
research
 6 / 0 MpDCL3 MpAGO1 MpAGO4a MpAGO4b MpDCL4 MpDCL1
Kubo, H., et al.
Journal of Plant Research
2018 		Biosynthesis of riccionidins and marchantins is regulated by R2R3- MYB transcription factors in Marchantia polymorpha.
research
 2 / 4 MpPAL MpCHS1 MpMYB02 MpEF1 MpR2R3-MYB14 MpC4H
Song M, Wang Y, Ma T, Terzaghi W, He K, Wang H, Xu B, Jing Y, Lin R, Deng XW, Zhu D, Wang Y.
Nucleic acids research
2025 		PKL mediates H3K4me2 modification and spatial gene congregation in chromatin regulation.
research
 6 / 0 Mpsnf1.2 MpHY5 MpPIF Mp1R-MYB20 Mpsnf1.17 MpTCP1
Tansley, C., et al.
New Phytologist
2023 		CIPK-B is essential for salt stress signalling in Marchantia polymorpha.
research
 1 / 5 MpCIPK-A MpCBL-A MpCIPK-B MpCBL-B MpCBL-C MpSOS1
Honkanen, S., et al.
eLIFE
2018 		Negative regulation of conserved RSL class I bHLH transcription factors evolved independently among land plants.
research
 2 / 4 MpFRH1 MpRSL1 MpEF1 MpIRE MpAPT1 MpCUL3
Kato, H., et al.
Nature Plants
2020a 		Design principles of a minimal auxin response system.
research
 3 / 3 MpARF3 MpARF1 MpEF1 MpARF2 MpIAA MpTPL
de Roij M, Heijdra E, Lamers J, Nishihama R, Borst JW, Weijers D.
Nature communications
2026 		Diversification of functional requirements for proteolysis of auxin response factors.
research
 2 / 4 MpARF3 MpARF1 MpARF2 MpIAA MpHSP MpUBE2
Kock C, Helmig J, Gutsche N, Dierschke T, Müller-Schüssele SJ, Zachgo S.
The Plant journal : for cell and molecular biology
2025 		Redox buffering and H2O2 orchestrate the vegetative development of Marchantia polymorpha.
research
 2 / 4 MpGSH1 MpMIR160 MpCLE2 MpTCP1 MpEF1a MpPLT
Wachananawat, B., et al.
Frontiers in Plant Science
2020 		Diversity of Pectin Rhamnogalacturonan I Rhamnosyltransferases in Glycosyltransferase Family 106.
research
 2 / 4 MpSYP3 MpRRT3 MpRRT1 MpUSE1A MpSYP4
Honkanen, S., et al.
New Phytologist
2022 		The GENOMES UNCOUPLED1 protein has an ancient, highly conserved role but not in retrograde signalling.
research
 1 / 5 MpPPR_67 MpEF1 MpRBCS MpFBPase MpLHCB2 MpACT
Wu, T.-Y., et al.
Nature Plants
2021 		Evolutionarily conserved hierarchical gene regulatory networks for plant salt stress response.
research
 3 / 3 MpWRKY6 MpWRKY1 MpEF1 MpWRKY12 MpWRKY3 MpWRKY14
Wu, T.-Y., et al.
Molecular Plant
2022b 		G protein controls stress readiness by modulating transcriptional and metabolic homeostasis in Arabidopsis thaliana and Marchantia polymorpha.
research
 3 / 3 MpWRKY6 MpXLG1 MpGPA1 MpEF1 MpWRKY12 MpGPB1
Tanaka, H., et al.
Plant Biotchnology
2018 		Salinity stress-responsive transcription factors in the liverwort Marchantia polymorpha.
research
 5 / 1 MpSBG9 MpRR-MYB1 MpBHLH2 MpBZIP12 MpEF1 MpB3-6
Dierschke, T., et al.
Current Biology
2024 		Control of sporophyte secondary cell wall development in Marchantia by a Class II KNOX gene.
research
 2 / 4 MpACOS5 MpBHLH37 MpKNOX1 MpKNOX2 MpBELL3 MpBELL1
Solé-Gil A, Sakai Y, Catarino B, Jones VAS, Youngstrom CE, Jordà-Segura J, Cheng CL, Dolan L, Ambrose BA, Ishizaki K, Blázquez MA, Agustí J.
Developmental cell
2025 		Divergent evolution of a thermospermine-dependent regulatory pathway in land plants.
research
 5 / 1 MpARF1 MpC3HDZ MpRSL1 MpLHW MpACL5 MpSACL
Flores-Sandoval, E., et al.
Plant and Cell Physiology
2016 		Efficient and Inducible Use of Artificial MicroRNAs in Marchantia polymorpha.
research
 3 / 3 MpARF1 MpMIR160 MpEF1 MpE(z) MpRR-A MpRR-B
Tabassum N, Goodrich J, Loake GJ.
Journal of experimental botany
2026 		A Key Role for S-Nitrosylation in Immune Regulation and Development in the Liverwort Marchantia polymorpha.
research
 1 / 5 MpGSNOR1 MpMCM7 MpPR1 MpNOX2 MpADH1 MpNPR1
Watanabe, K., et al.
Plant & Cell Physiology
2024 		Rapid Propagation of Ca2+ Waves and Electrical Signals in the Liverwort Marchantia polymorpha.
research
 1 / 5 MpTPC1 MpTPC2 MpEF1 MpTPC3 MpGLR MpRBOHB
Zhong, R., et al.
Plant and Cell Physiology
2024 		Ancient Origin of Acetyltransferases Catalyzing O-acetylation of Plant Cell Wall Polysaccharides.
research
 6 / 0 MpPOAT5 MpPOAT3 MpPOAT2 MpPOAT1 MpPOAT4 MpMOAT1
Khatun, N., et al.
Physiologia Plantarum
2023a 		Abscisic acid- mediated sugar responses are essential for vegetative desiccation tolerance in the liverwort Marchantia polymorpha.
research
 1 / 5 MpABA1 MpBZIP12 MpEF1 MpLEAL1 MpLEAL2 MpB3-6
Arai, H., et al.
Journal of Plant Research
2019 		Genome-wide analysis of MpBHLH12, a IIIf basic helix-loop-helix transcription factor of Marchantia polymorpha.
research
 1 / 5 MpBHLH12 MpPKS21 MpMYB02 MpEF1 MpR2R3-MYB14 UGT
Otani, K., et al.
Development
2018 		An evolutionarily conserved NIMA-related kinase directs rhizoid tip growth in the basal land plant Marchantia polymorpha.
research
 1 / 5 MpTUB2 MpRSL1 MpEF1 MpYAK1 MpACT1 MpNEK1
Yamamoto, C., et al.
Proceeding of the National Academy of Sciences USA
2024 		The cAMP signaling module regulates sperm motility in the liverwort Marchantia polymorpha.
research
 3 / 3 MpPKAR1 MpEF1 MpTIR1 MpCAPE MpPKAR2 MpPKAC
Soriano, G., et al.
New Phytologist
2022 		An evolutionarily ancient fatty acid desaturase is required for the synthesis of hexadecatrienoic acid, which is the main source of the bioactive jasmonate in Marchantia polymorpha.
research
 1 / 5 MpLOX8 MpCOI1 MpFAD5 MpAPT MpDIR39 MpPATATIN
Inoue, K., et al.
Plant and Cell Physiology
2019a 		Reproductive induction is a far-red high irradiance response that is mediated by phytochrome and PHYTOCHROME INTERACTING FACTOR in Marchantia polymorpha.
research
 3 / 3 MpPHY MpFHY1 MpPIF MpEF1 MpAPT MpBELL1
Kaji, T., et al.
iScience
2024 		D4-dn-iso-OPDA, a bioactive plant hormone of Marchantia polymorpha.
research
 2 / 4 MpCOI1 MpFAD5 MpDIR33 MpPAT MpJAZ MpDIR17
Futagami K, Tsuzuki M, Yoshida M, Watanabe Y.
Journal of experimental botany
2025 		MpmiR319 promotes gemma/gemma cup formation in the liverwort Marchantia polymorpha.
research
 5 / 1 MpRKD MpR2R3-MYB21 MpMIR319A MpMIR319B MpKAI2 MpmiR319
Cao, M.-X., et al.
Nature Plants
2024 		MpMLO1 controls sperm discharge in liverwort.
research
 1 / 5 MpRKD MpFER MpMLO1 MpMLO2 MpMLO3 MpMLO4
Lu, Y.-T., et al.
Current Biology
2024 		Convergent evolution of water-conducting cells in Marchantia recruited the ZHOUPI gene promoting cell wall reinforcement and programmed cell death.
research
 2 / 4 MpRSL1 MpICE1 MpICE2 MpZOU1 MpNAC5 MpZOU2
Mecchia, M. A., et al.
Development
2022 		The single Marchantia polymorpha FERONIA homolog reveals an ancestral role in regulating cellular expansion and integrity.
research
 2 / 4 MpEF1 MpFER MpMRI MpACT MpLRE MpRALF
Champion, C., et al.
PLoS Genetics
2021 		Microtubule associated protein WAVE DAMPENED2-LIKE (WDL) controls microtubule bundling and the stability of the site of tipgrowth in Marchantia polymorpha rhizoids.
research
 3 / 3 MpEF1 MpNEK MpWDL MpRabA4 MpTUB1
Takemura, M., et al.
Planta
2015a 		Biosynthetic routes of hydroxylated carotenoids (xanthophylls) in Marchantia polymorpha, and production of novel and rare xanthophylls through pathway engineering in Escherichia coli.
research
 3 / 3 MpBHY MpCYP97A MpCYP97B MpCYP97C MpLCYb MpLCYe
Norizuk, T., et al.
Autophagy
2022 		Autophagy regulates organelle reorganization during spermiogenesis in the liverwort Marchantia polymorpha.
research
 4 / 1 MpATG14 MpATG5 MpATG7 MpDRP3 MpATG13
Iwata KP, Shimizu T, Sakai Y, Furuya T, Fukumura H, Kondo Y, Masuda T, Ishizaki K, Fukaki H.
The New phytologist
2025 		Evolutionary-conserved RLF, a cytochrome b5-like heme-binding protein, regulates organ development in Marchantia polymorpha.
research
 1 / 4 MpE2F MpRKD MpRLF MpKARAPPO MpGCAM1
Yelina, N. E., et al.
Cell Reports
2024 		Streamlined regulation of chloroplast development in the liverwort Marchantia polymorpha.
research
 1 / 4 MpGATA2 MpHY5 MpGATA4 MpGARP8 MpSCL
Kubo, H., et al.
Planta
2024 		MpR2R3-MYB2 is a key regulator of oil body formation in Marchantia polymorpha.
research
 1 / 4 MpLTP-like63 MpMYB02 MpEF1 MpSYP12B MpABCG1
Mutte, S. K., et al.
eLIFE
2018 		Origin and evolution of the nuclear auxin response system.
research
 1 / 4 MpARF3 MpARF1 MpCOI1 MpARF2 MpTIR1
Ishida, T., et al.
The Plant Journal
2024 		The D-mannose-L-galactose pathway plays a predominant role in ascorbate biosynthesis in the liverwort Marchantia polymorpha but is not regulated by light and oxidative stress.
research
 5 / 0 Mp1g07760 Mp2g15930 Mp3g15520 MpDFR-like12 MpGMP
Minamino, N., et al.
Journal of Plant Research
2017 		Dynamic reorganization of the endomembrane system during spermatogenesis in Marchantia polymorpha.
research
 1 / 4 MpRAB5 MpSYP12A MpSYP13A MpVAMP71 MpSYP2
Hirakawa, Y., et al.
PLoS Genetics
2019 		Control of haploid meristem activity by CLE peptide signaling in Marchantia polymorpha.
research
 2 / 3 MpTDR MpCLV1 MpEF1 MpCLE2 MpCLE1
Sierocka, I., et al.
Planta
2020 		The identification of differentially expressed genes in male and female gametophytes of simple thalloid liverwort Pellia endiviifolia sp. B using an RNA-seq approach.
research
 0 / 5 MpSPL1 MpSPL2 MpRKD MpBNB MpTCP1
Rövekamp, M., et al.
Current Biology
2016 		Marchantia MpRKD Regulates the Gametophyte- Sporophyte Transition by Keeping Egg Cells Quiescent in the Absence of Fertilization.
research
 1 / 4 MpMID MpRKD MpRWP1 MpEF1 MpNIN
Flores-Sandoval E, Suzuki H, Lazner JA, Briginshaw LN, Fisher TJ, Romani F, Levins J, Hainiwa E, Kinami T, Imai Y, Yumoto E, Asahina M, Kohchi T, Nishihama R, Bowman JL.
Current biology : CB
2026 		The B-class auxin response factor MpARF2 is essential for meristem organization in free-living plant gametophytes.
research
 2 / 3 MpARF1 MpARF2 MpERF20 MpYUC2 MpR2DII
Norizuki, T., et al.
Frontiers in Plant Biology
2023 		Autophagy regulates plastid reorganization during spermatogenesis in the liverwort Marchantia polymorpha.
research
 1 / 4 MpATG5 MpSIG2 MpPGM1 MpSYP12A MpVAMP71
Furuya, T., et al.
Plant Biotechnology
2022 		A glycogen synthase kinase 3-like kinase MpGSK regulates cell differentiation in Marchantia polymorpha.
research
 1 / 4 MpBZR2 MpTAA MpCYCD_1 MpDWF5A MpGSK
Bowman, J. L.
Nature Plants
2022b 		The origin of a land flora.
research
 0 / 5 MpBZR2 MpRKD MpKNOX1 MpKNOX2 MpBELL
Liang Y, Podolec R, Chappuis R, Defossez E, Glauser G, Rötzer J, Stolze SC, Dolan L, Nakagami H, Demarsy E, Ulm R.
Plant Physiology
2026 		Conservation and divergence of UVR8 photoreceptor-mediated UV-B signaling in Marchantia polymorpha.
research
 5 / 0 MpHY5 MpUVR8 MpRUP1 MpCOP1 MpSPA
Kondou, Y., et al.
Planta
2019 		Physiological function of photoreceptor UVR8 in UV-B tolerance in the liverwort Marchantia polymorpha.
research
 1 / 4 MpHY5 MpCHS1 MpUVR8 MpEF1 MpR2R3-MYB14
Hisanaga, T., et al.
The EMBO Journal
2019a 		A cis-acting bidirectional transcription switch controls sexual dimorphism in the liverwort.
research
 2 / 3 MpSUF MpFGMYB MpEF1 MpLC7 MpRPM
Busch, A., et al.
New Phytologist
2019 		MpTCP1 controls cell proliferation and redox processes in Marchantia polymorpha.
research
 1 / 4 MpTCP2 MpTGA MpEF1 MpH4 MpTCP1
Takahashi G, Yamaya S, Romani F, Bonter I, Ishizaki K, Shimamura M, Kiyosue T, Haseloff J, Hirakawa Y.
Current biology : CB
2026 		Initiation of asexual reproduction by the AP2/ERF gene GEMMIFER in Marchantia polymorpha.
research
 3 / 2 MpERF1 MpGMFR MpERF20 MpCLE2 MpGCAM1
Abdrakhmanov A, Ethier E, Anisimova AS, Grujic N, Papareddy RK, Clavel M, Karagöz GE, Hallacli E, Dagdas Y.
Developmental cell
2026 		A lineage-specific selective autophagy receptor module mediates P-body turnover.
research
 3 / 2 MpATG8a MpATG8b MpDCP2 MpDCP1 MpEDC4
Poveda, J., et al.
Planta
2023 		A potential role of salicylic acid in the evolutionary behavior of Trichoderma as a plant pathogen- from Marchantia polymorpha to Arabidopsis thaliana.
research
 4 / 1 MpLOX1 MpICS MpCOI1 MpPR1 MpEF1
Poveda J.
Frontiers in plant science
2025 		Editorial: Advancing Marchantia polymorpha research: unveiling physiological, developmental, and evolutionary insights.
other
 0 / 5 MpCCD7 MpSPI MpSGF10B MpD27-2 MpD27-1
Davies KM, Albert NW, Yorker RM, Schwinn KE, Zhou Y.
Journal of the Royal Society of New Zealand
2026 		The Biosynthesis and Functions of Flavonoids: Recent Advances From Studies Across Land Plant Diversity.
review
 0 / 5 MpBHLH12 MpMYB02 MpWRKY10 MpPR10.5 MpMYB14
Albert, N. W., et al.
New Phytologist
2018 		Genetic analysis of the liverwort Marchantia polymorpha reveals that R2R3MYB activation of flavonoid production in response to abiotic stress is an ancient character in land plants.
research
 1 / 4 MpCHS1 MpMYB02 MpR2R3-MYB14 MpCHI MpACTIN7
Buschmann, H., et al.
New Phytologist
2016 		Microtubule dynamics of the centrosome-like polar organizers from the basal land plant Marchantia polymorpha.
research
 4 / 1 MpTUB2 MpTUB4 MpEF1 MpTUB1 MpTUB3
Mase H, Sumiura A, Yoshitake Y, Kohchi T, Takahashi T, Motose H.
Plant & cell physiology
2025 		Involvement of a NIMA-related kinase in cell division of the liverwort Marchantia polymorpha.
research
 1 / 4 MpTUB2 MpWDL MpACT MpEF1a MpNEK1
Zhu Y, Zhu X, Bi S, Teng D, Tahir M, Liu Y, Wang L, Liu H, Wen T, Zhu L, Li Z, Chen X, Zhang M, Cai W, Liu Z, Zheng M, Zhang Y, Gong JM, Wang JW, He Z, Li L, Wang E, Ji M, Yang W.
Developmental cell
2026 		Epidermal hydrodynamics controls water homeostasis of shoot meristems for plant adaptation to terrestrial environments.
research
 3 / 2 MpPIP1 Mp3g22950 MpPIP2 MpC4HDZ MpU6
Minamino, N., et al.
Plant & Cell Physiology
2024 		Analysis of Plant- Specific ANTH Domain–Containing Protein in Marchantia polymorpha.
research
 2 / 3 MpPICALM-A MpPICALM-B MpSYP12A MpMAPKKK22 MpPICALM
Yen MJ, Lin KH, Thalimaraw L, Yang HR, Boonyaves K, Cheng CY, Wu TY.
Cell reports
2025 		Conserved HSFA1-dependent chromatin dynamics drive heat stress responses in plants.
research
 4 / 1 MpBZIP12 MpWRKY10 MpHSFA1 MpHSFB1 MpHSP90
Wallner ES, Edelbacher N, Dolan L.
Current biology : CB
2026 		De novo meristem development in Marchantia polymorpha requires light and an apical auxin signaling minimum.
research
 1 / 4 MpC2HDZ MpARF2 MpERF20 MpYUC2 MpRCI2
Robinson J.
The Plant cell
2026 		Setting the stage: the sleek cell-cycle machinery of the liverwort Marchantia polymorpha.
research
 0 / 5 MpCYCA MpKRP MpCYCB_1 MpCDKB MpCYCD_1
Schweizer F, Monte I, Solano R, Reymond P.
Plant-environment interactions (Hoboken, N.J.)
2025 		Marchantia polymorpha Defense Against Snail Herbivory.
research
 1 / 4 MpCOI1 MpC1HDZ MpAOS1 MpAOS2 MpMYC
Monte, I., et al.
Current Biology
2020 		An Ancient COI1-Independent Function for Reactive Electrophilic Oxylipins in Thermotolerance.
research
 1 / 4 MpCOI1 MpPAT MpHSP17 MpHSP20 MpHSP21
Romani, F., et al.
Journal of Experimental Botany
2022 		Liverwort oil bodies- diversity, biochemistry, and molecular cell biology of the earliest secretory structure of land plants.
research
 0 / 5 MpC1HDZ MpMYB02 MpSYP12B MpSYP12A MpERF13
Proust, H., et al.
Current Biology
2016 		RSL Class I Genes Controlled the Development of Epidermal Structures in the Common Ancestor of Land Plants.
research
 1 / 4 MpRSL1 MpEF1 MpACT MpCUL MpRSL2
Fisher, T. J., et al.
New Phytologist
2023 		PIN-FORMED is required for shoot phototropism-gravitropism and facilitates meristem formation in Marchantia polymorpha.
research
 1 / 4 MpPIN1 MpPIN2 MpTAA MpYUC2 MpACT
Knosp, S., et al.
The EMBO Journal
2024 		An ancient role for CYP73 monooxygenases in phenylpropanoid biosynthesis and embryophyte development.
research
 1 / 4 MpEF1 MpC4H MpACTIN7 MpCYP73A2 MpCYP73A3
Hisanaga, T., et al.
Current Biology
2023a 		The Polycomb repressive complex 2 deposits H3K27me3 and represses transposable elements in a broad range of eukaryotes.
research
 1 / 4 MpEF1 MpE(z)1 MpMET MpKNOX2 MpBELL1
Ishikawa, K., et al.
The Plant Journal
2022 		The endoplasmic reticulum membrane–bending protein RETICULON facilitates chloroplast relocation movement in Marchantia polymorpha.
research
 1 / 4 MpPHOT MpRTN1 MpRTN2 MpRTN4 MpRTN5
Li M, Wang C, Sonego P, Barbaro E, Bertoldi D, Cestaro A, Larcher R, Sanita di Toppi L, Varotto C.
Journal of hazardous materials
2025 		Functional evidence for the partial conservation of arsenic tolerance mechanisms in Marchantia polymorpha and Arabidopsis thaliana.
research
 1 / 4 MpGST3 MpGH18.9 MpPIN3 MpPL MpGST19
Naramoto, S., et al.
The Plant Cell
2022 		The bryophytes Physcomitrium patens and Marchantia polymorpha as model systems for studying evolutionary cell and developmental biology in plants.
research
 0 / 5 MpCLE2 MpIAA MpCLE1 MpTPL MpYUC2
Ikeda, Y., et al.
Plant and Cell Physiology
2018 		Loss of CG methylation in Marchantia polymorpha causes disorganization of cell division and reveals unique DNA methylation regulatory mechanisms of non-CG methylation.
research
 1 / 3 MpDRMa MpMET MpYUC2 MpMET1
Yao, J., et al.
New Phytologist
2021 		Desmethyl butenolides are optimal ligands for karrikin receptor proteins.
research
 2 / 2 MpMAX2 MpKAI2B MpKAI2A MpDLP1
Bonhomme, S., et al.
Journal of Experimental Botany
2022 		Synthesis and signalling of strigolactone and KAI2- ligand signals in bryophytes.
research
 0 / 4 MpMAX2 MpKAI2B MpKAI2A MpSMXL
Xu, B., et al.
New Phytologist
2021 		The land plant-specific MIXTA-MYB lineage is implicated in the early evolution of the plant cuticle and the colonization of land.
research
 1 / 3 MpCYP704-like1 MpSBG9 MpABCG2 Mp7g13040
Hernández-García, J., et al.
Proceeding of the National Academy of Sciences USA
2024b 		DELLA proteins recruit the Mediator complex subunit MED15 to coactivate transcription in land plants.
research
 3 / 1 MpPAL MpR2R3-MYB14 MpGRAS6 MpMED15
Thamm, A., et al.
BioRxiv
2019 		Independent evolution of lateral inhibition mechanisms in different lineages of land 1 plants- MpFEW RHIZOIDS1 miRNA-mediated lateral inhibition controls rhizoid cell 2 patterning in Marchantia polymorpha.
research
 2 / 2 MpFRH1 MpRSL1 MpAPT MpAPT1
Rienstra, J., et al.
Proceeding of the National Academy of Sciences USA
2025 		A conserved ARF–DNA interface underlies auxin-triggered transcriptional response.
research
 2 / 2 MpARF3 MpARF1 MpARF2 MpAPT3
Carrillo-Carrasco, V. P., et al.
The EMBO Journal
2023 		The birth of a giant- evolutionary insights into the origin of auxin responses in plants.
review
 0 / 4 MpARF3 MpARF1 MpARF2 MpIAA
Jones, V. A. S., et al.
Development
2017 		MpWIP regulates air pore complex development in the liverwort Marchantia polymorpha.
research
 1 / 3 MpWIP MpMIR160 MpAPT MpACT
Alisha, A., et al.
Scientific Reports
2024 		Comparative analysis of SPL transcription factors from streptophyte algae and embryophytes reveals evolutionary trajectories of SPL family in streptophytes.
research
 0 / 4 MpSPL1 MpSPL2 MpSPL3 MpSPL4
Nishihama R, Ishizaki K.
Current biology : CB
2025 		Plant development: A P450 brake for one meristem after dichotomous branching in the shade.
other
 0 / 4 MpSPL1 MpPIF MpCYP78E1 MpSPL15
Schwarze, C. M., et al.
The Plant Journal
2024 		Phenylalanine ammonia-lyases and 4-coumaric acid coenzyme A ligases in Chara braunii, Marchantia polymorpha, and Physcomitrium patens as extant model organisms for plant terrestrialization.
research
 4 / 0 MpPAL1 MpPAL2 MpPAL4 MpPAL3
Genau, A. C., et al.
Plant Reproduction
2021 		HAG1 and SWI3A/B control of male germ line development in P. patens suggests conservation of epigenetic reproductive control across land plants.
research
 1 / 3 MpDUO1 MpRKD MpBNB MpHAG1
Hisanaga, T., et al.
Nature Plants
2019b 		Building new insights in plant gametogenesis from an evolutionary perspective.
research
 0 / 4 MpDUO1 MpFGMYB MpRKD MpBNB
Hernández-García, J., et al.
Current Biology
2021 		Coordination between growth and stress responses by DELLA in the liverwort Marchantia polymorpha.
research
 1 / 3 MpSMR MpPIF MpEF1 MpGRAS6
Cui, Y., et al.
Plant & Cell Physiology
2023 		Three-Dimensional Morphological Analysis Revealed the Cell Patterning Bases for the Sexual Dimorphism Development in the Liverwort Marchantia polymorpha.
research
 1 / 3 MpSUF MpFGMYB MpBNB MpBPCU
Yoro E, Suzuki S, Akiyoshi N, Kofuji R, Sakakibara K.
The New Phytologist
2025 		The transcription factor PpRKD evokes female developmental fate in the sexual reproductive organs of Physcomitrium patens.
research
 0 / 4 MpFGMYB MpRKD MpBNB MpBPCU
Yoro, E., et al.
Current Biology
2024 		Sexual reproduction- Is the genetic pathway for female germ cell specification conserved in land plants?
research
 0 / 4 MpFGMYB MpBNB MpBPCU MpCKI
Hashimoto, K., et al.
Plant & Cell Physiology
2022 		Functional Analyses of the Two Distinctive Types of Two-Pore Channels and the Slow Vacuolar Channel in Marchantia polymorpha.
research
 3 / 1 MpTPC1 MpTPC2 MpTPC3 MpACT
Bowman, J. L., et al.
Plant and Cell Physiology
2016a 		The Naming of Names: Guidelines for Gene Nomenclature in Marchantia.
review
 0 / 4 MpMIR160 MpEF1 MpMIR166a MpMIR166b
Chen, J., et al.
Plant Physiology
2024 		Phos-fate of the liverwort- Unlocking the secrets to Pi homeostasis in Marchantia polymorpha.
research
 2 / 2 MpSPX MpMATE1 MpITPK1 MpPHO1a
Moriya KC, Kono H, Lu YT, Loue-Manifel J, Oka Y, Matsushita T, Honjo MN, Ishizaki K, Kudoh H, Goodrich J, Shimada T.
Journal of experimental botany
2026 		Ectopic, but not endogenous, expression of the transcription factor gene MpSETA disrupts epidermal tissue formation in Marchantia polymorpha.
research
 4 / 0 MpSETA MpICE2 MpSCRM2 MpSMF
Moriya, K. C., et al.
Nature Plants
2023 		Stomatal regulators are co-opted for seta development in the astomatous liverwort Marchantia polymorpha.
research
 2 / 2 MpSETA MpEF1 MpICE1 MpICE2
Lopez-Obando, M., et al.
New Phytologist
2022 		Dependence on clade II bHLH transcription factors for nursing of haploid products by tapetal-like cells is conserved between moss sporangia and angiosperm anthers.
research
 0 / 4 MpBHLH36 MpBHLH50 MpBHLH37 MpBHLH8
Lyapina, I., et al.
Plant Molecular Biology
2021 		Possible role of small secreted peptides (SSPs) in immune signaling in bryophytes.
research
 0 / 4 Mp2g04390 Mp6g06426 Mp6g11390 Mp7g05920
Chen H, Zhang Y, Shi Y, Zeng S, Chen K, Mou W, Li D.
Journal of agricultural and food chemistry
2025 		Mechanistic Insights into d-Alanine-Induced Plant Growth Inhibition: Synergistic Roles of Transport, Transcriptional Regulation, and Metabolic Perturbations.
research
 4 / 0 MpBZIP4 MpLHT1 MpDAT MpalphaCAL
Keyl, A., et al.
New Phytologist: https://doi.org/10.1111/nph.19687
2024 		Divergent evolution of the alcohol-forming pathway of wax biosynthesis among bryophytes.
research
 2 / 2 MpFAR2 MpAPT MpWSD1 MpACTIN7
Furuya, T., et al.
Development
2018 		ANGUSTIFOLIA contributes to the regulation of three-dimensional morphogenesis in the liverwort Marchantia polymorpha.
research
 1 / 3 MpTUB2 MpEF1 MpSUB MpAN
Frangedakis E, Yelina NE, Eeda SK, Romani F, Fragkidis A, Haseloff J, Hibberd JM.
Journal of experimental botany
2026 		A tRNA-gRNA multiplexing system for CRISPR genome editing in Marchantia polymorpha.
research
 0 / 4 MpRR-MYB2 MpRR-MYB5 MpGLK MpU6
Kushwaha A, Singh S, Zheng BS, Tripathi DK, Gupta R, Singh VP.
Journal of integrative plant biology
2025 		MpRR-MYB2 and MpRR-MYB5: New players of chloroplast biogenesis.
other
 0 / 4 MpRR-MYB2 MpRR-MYB5 MpGATA4 MpGLK
Gutsche, N., et al.
Plant Direct
2017 		Conserved redox- dependent DNA binding of ROXY glutaredoxins with TGA transcription factors.
research
 3 / 1 MpTGA MpEF1 MpROXY1 MpROXY2
Inoue, K., et al.
Plant Cell
2016 		Phytochrome Signaling Is Mediated by PHYTOCHROME INTERACTING FACTOR in the Liverwort Marchantia polymorpha.
research
 2 / 2 MpPHY MpLRL MpPIF MpEF1
Kaji T, Nishizato Y, Matsumoto K, Okumura T, Ueda M.
Journal of experimental botany
2026 		Advances in the chemical biology of jasmonates.
review
 0 / 4 MpCOI1 MpJAZ MpGH3A MpAOC
Jimenez-Aleman GH, Michavila S, Paz FM, Kayastha F, Soriano G, Kneeshaw S, Barbas C, Rey-Stolle MF, Zamarreño AM, García-Mina JM, Gimenez-Ibañez S, Franco-Zorrilla JM, Solano R.
The New Phytologist
2026 		Weaponizing nutrition: plants use a double strategy to fight herbivory, converting nutritionally essential fatty acids into defensive oxylipin signals.
research
 2 / 2 MpCOI1 MpFAD3 MpFAD7 MpJAZ
Koeduka, T., et al.
Plant Biotechnology
2022 		CRISPR-Cas9- mediated disruption of ALLENE OXIDE SYNTHASE results in defective 12-oxo- phytodienoic acid accumulation and reduced defense against spider mite (Tetranychus urticae) in liverwort (Marchantia polymorpha).
research
 2 / 2 MpC1HDZ MpAOS1 MpAOS2 MpGSK
Kageyama, A., et al.
Phytochemistry
2015 		Abscisic acid induces biosynthesis of bisbibenzyls and tolerance to UV-C in the liverwort Marchantia polymorpha.
research
 1 / 3 MpC1HDZ MpMYB02 MpDIR17 MpABI1
Liu, S., et al.
Genome Biology
2021b 		H2A ubiquitination is essential for Polycomb Repressive Complex 1-mediated gene regulation in Marchantia polymorpha.
research
 3 / 1 MpH2A MpBMI1L MpBMI1 MpRING
Kanaris M, Lee J, Chang B, Christendat D.
Molecular biology and evolution
2025 		Shikimate Kinase-Like 1 Participates in an Ancient and Conserved Role Contributing to Chloroplast Biogenesis in Land Plants.
research
 2 / 2 Mp3g07860 MpSK1 MpEF1 MpSK2
Shinkawa, H., et al.
Plant & Cell Physiology
2022 		Protein Kinase MpYAK1 Is Involved in Meristematic Cell Proliferation, Reproductive Phase Change and Nutrient Signaling in the Liverwort Marchantia polymorpha.
research
 1 / 3 MpRSL1 MpDYRKP MpYAK1 MpPRAF
Furuya, T., et al.
Journal of Plant Research
2021 		A plant-specific DYRK kinase DYRKP coordinates cell morphology in Marchantia polymorpha.
research
 1 / 3 MpDYRKP MpAN MpDYRK2 MpTAR1
Koeduka, T., et al.
Planta
2015 		Biochemical characterization of allene oxide synthases from the liverwort Marchantia polymorpha and green microalgae Klebsormidium flaccidum provides insight into the evolutionary divergence of the plant CYP74 family.
research
 2 / 2 MpAOS1 MpAOS2 MpDIR17 MpLOX1-3
Koide, E., et al.
Plant and Cell Physiology
2020 		Regulation of Photosynthetic Carbohydrate Metabolism by a Raf-Like Kinase in the Liverwort Marchantia polymorpha.
research
 1 / 3 MpHA2 MpPGM1 MpYAK1 MpPRAF
Li, M., et al.
Journal of Hazardous Materials
2024a 		Elucidation of arsenic detoxification mechanism in Marchantia polymorpha- The role of ACR3.
research
 1 / 3 MpEF1 MpAPT MpACR3 MpACT
Ghosh, T. K., et al.
Physiologia Plantarum
2016 		Abscisic acid-induced gene expression in the liverwort Marchantia polymorpha is mediated by evolutionarily conserved promoter elements.
research
 2 / 2 MpEF1 MpDHN2 MpDHN1 MpABI1
Wu, T.-Y., et al.
Plant Cell
2022a 		Diversification of heat shock transcription factors expanded thermal stress responses during early plant evolution.
research
 4 / 0 MpHSF1 MpHSF2 MpHSFA1V MpHSFA1
Tan, Q. W., et al.
Nature Communications
2023 		Cross-stress gene expression atlas of Marchantia polymorpha reveals the hierarchy and regulatory principles of abiotic stress responses.
research
 0 / 4 MpHSF1 MpPAL7 MpERF20 MpERF15
Dong, S., et al.
Nature Genetics
2025 		Bryophytes hold a larger gene family space than vascular plants.
research
 2 / 2 Mp4g17190 Mp5g08960 Mp7g02380 Mp8g04260
Berland, h., et al.
Proceedings of the National Academy of Sciences USA
2019 		Auronidins are a previously unreported class of flavonoid pigments that challenges when anthocyanin biosynthesis evolved in plants.
research
 1 / 3 MpCHIL MpR2R3-MYB14 MpCHI MpPPO
Tang H, Smoljan A, Zou M, Zhang Y, Lu KJ, Friml J.
Plant, cell & environment
2026 		The miniW Domain Directs Polarized Membrane Localization of Non-Canonical PINs in Marchantia polymorpha.
research
 4 / 0 MpPIN2 MpPIN4 MpPIN5 MpPIN3
Zhu TT, Xu YL, Ta H, Zhang JZ, Xu DD, Fu J, Hao Y, Du NH, Cheng AX, Lou HX.
The Plant journal : for cell and molecular biology
2025 		Reversible Glc-conjugation/hydrolysis modulates the homeostasis of lunularic acid in Marchantia polymorpha growth.
research
 3 / 1 MpBGLU1 MpBGLU2 MpBGLU3 MpUGT744A1
Chu, J., et al.
Plant Physiology and Biochemistry
2018 		Molecular identification of histone acetyltransferases and deacetylases in lower plant Marchantia polymorpha.
research
 2 / 2 MpHAT MpHDAC MpSIRT4 MpSIRT5
Zhu, T. T., et al.
Journal Cellular Physiology
2023 		Functional specialization of two UDP- glycosyltransferases MpUGT735A2 and MpUGT743A1 in the liverworts Marchantia polymorpha.
research
 2 / 2 MpUGT735A2 MpUGT737B1 MpUGT741A1 MpUGT743A1
Shimakawa, G., et al.
Plant Physiology
2017 		The liverwort, Marchantia, drives alternative electron flow using a flavodiiron protein to protect PSI.
research
 1 / 2 MpFLV3 MpFLV1 MpACT
Balcerowicz M.
The Plant journal : for cell and molecular biology
2025 		A cut above: the critical roles of DICER-LIKE genes in Marchantia development.
other
 0 / 3 MpDCL3 MpDCL4 MpDCL1a
de Roij M, Hernandez Garcia J, Das S, Borst JW, Weijers D.
Nature plants
2025 		ARF degradation defines a deeply conserved step in auxin response.
research
 3 / 0 MpARF3 MpARF1 MpARF2
Furumizu, C., et al.
New Phytologist
2023 		Peptide signaling through leucine-rich repeat receptor kinases- insight into land plant evolution.
research
 0 / 3 MpTDR MpCLE2 MpCLE1
Spencer V, Casey C, Mosiolek M, Jandrasits K, Edelbacher N, Dolan L.
Current biology : CB
2025 		The cytochrome P450 enzyme MpCYP78E1 inhibits meristem initiation and activity in Marchantia polymorpha.
research
 2 / 1 MpSPL1 MpCYP78-like1 MpPR10.2
Flores-Sandoval E, Bowman JL.
Journal of experimental botany
2025 		Complete loss of A-ARF activity in bryophytes reveals a role for auxin-adjacent regulatory networks.
review
 0 / 3 MpARF1 MpTAA MpTIR1
Akashi, H., et al.
Frontiers in Plant Science
2018 		Identification and Biochemical Characterization of the Serine Biosynthetic Enzyme 3-Phosphoglycerate Dehydrogenase in Marchantia polymorpha.
research
 1 / 2 MpPSAT MpPSP MpPGDH
Karaaslan, E. S. h., et al.
Nature Plants
2020 		Marchantia TCP transcription factor activity correlates with three-dimensional chromatin structure.
research
 1 / 2 MpTCP2 MpTCP1 MpVg00350
Caygill, S., et al.
Proceeding of the National Academy of Sciences USA
2024 		MurA- catalyzed synthesis of 5- enolpyruvylshikimate-3- phosphate confers glyphosate tolerance in bryophytes.
research
 2 / 1 MpMurF MpMurA MpEPSPS
Zhao, J., et al.
Journal of Cell Biology
2022 		Plant autophagosomes mature into amphisomes prior to their delivery to the central vacuole.
research
 1 / 2 MpATG8a MpATG8b MpCFS1
Yadav R, Liu G, Rana P, Pullagurla NJ, Qiu D, Jessen HJ, Laha D.
PLoS genetics
2025 		Conservation of heat stress acclimation by the IPK2-type kinases that control the synthesis of the inositol pyrophosphate 4/6-InsP7 in land plants.
research
 2 / 1 MpIPMK MpACT7 MpHSFB1
Hirakawa, Y.
Nature Plants
2022 		Evolution of meristem zonation by CLE gene duplication in land plants.
research
 3 / 0 MpCLV1 MpCLE2 MpCLE1
Naramoto, S., et al.
PLoS Biology
2019a 		A conserved regulatory mechanism mediates the convergent evolution of plant shoot lateral organs.
research
 1 / 2 MpLOS1 MpEF1 MpYUC2
Tawfik, M. M., et al.
Bioscience, Biotechnology, and Biochemistry
2017 		n-Hexanal and (Z)-3 hexenal are generated from arachidonic acid and linolenic acid by a lipoxygenase in Marchantia polymorpha L.
research
 1 / 2 MpLOX1 MpLOX7 MpEF1
Dehors, J., et al.
Frontiers in Plant Science
2019 		Evolution of Cell Wall Polymers in Tip-Growing Land Plant Gametophytes: Composition, Distribution, Functional Aspects and Their Remodeling.
review
 0 / 3 MpCSLD1 MpCSLD2 MpXUT1
Doll, Y., et al.
Quantitative Plant Biology
2024 		Beyond stomatal development- SMF transcription factors as versatile toolkits for land plant evolution.
research
 3 / 0 MpSETA MpICE2 MpSMF
Levins, J., et al.
Current Biology
2024 		A subclass II bHLH transcription factor in Marchantia polymorpha gives insight into the ancestral land plant trait of spore formation.
research
 1 / 2 MpBHLH37 MpC1HDZ MpACTIN7
Kanazawa T, Kawaguchi T, Moriwaki Y, Iwasaki KI, Ueda T, Matsui K.
Plant & cell physiology
2026 		ABCG transporters are involved in the accumulation of specialized metabolites in the oil bodies of Marchantia polymorpha.
research
 2 / 1 MpABCG36 MpSYP12B MpABCG1
Battle, A. L. L., et al.
Applications in Plant Sciences: e11632
2025 		Optogenetic control of transgene expression in Marchantia polymorpha.
research
 0 / 3 MpPHY MpPIF MpEF1
Monte, I., et al.
Nature Chemical Biology
2018 		Ligand-receptor co-evolution shaped the jasmonate pathway in land plants.
research
 1 / 2 MpFAE3 MpCOI1 MpDIR17
Nagaoka, N., et al.
Scientific Reports
2017 		DRP3 and ELM1 are required for mitochondrial fission in the liverwort Marchantia polymorpha.
research
 3 / 0 MpDRP3 MpFIS1 MpELM1
Ghosh R, Yadav R, Pullagurla NJ, Rana P, Laha D.
FEBS letters
2025 		The expanding landscape of inositol phosphate signaling network in land plants.
review
 0 / 3 MpITPK1 MpGRAS6 MpVIH
Monte, I., et al.
PNAS
2022 		JAZ is essential for ligand specificity of the COI1-JAZ co-receptor.
research
 2 / 1 MpCOI1 MpJAZ MpMYC
Kobayashi, Y., et al.
Genome Biology and Evolution
2016 		Eukaryotic Components Remodeled Chloroplast Nucleoid Organization during the Green Plant Evolution.
research
 3 / 0 MpWHIRLY MpSWIB MppTAC3
Aki, S. S., et al.
Plant Signaling & Behavior
2019b 		Cytokinin signaling coordinates development of diverse organs in Marchantia polymorpha.
research
 1 / 2 MpRRA MpRRB MpCKX2
Takeda, S., et al.
Plant Biotechnology
2022 		IRE1-mediated cytoplasmic splicing and regulated IRE1-dependent decay of mRNA in the liverwort Marchantia polymorpha.
research
 2 / 1 MpBZIP7 MpGSK MpIRE1
Hirashima, T., et al.
Biochemical and Biophysical Research Communications
2020 		A START domain-containing protein is involved in the incorporation of ER-derived fatty acids into chloroplast glycolipids in Marchantia polymorpha.
research
 1 / 2 MpSTAR3 MpSTAR1 MpSTAR2
Jiang, C.-K., et al.
Plant Physiology
2020 		Insights into the Diversification and Evolution of R2R3-MYB Transcription Factors in Plants.
research
 0 / 3 MpR2R3-MYB15 MpR2R3-MYB14 MpGCAM1
Mano, S., et al.
PLoS ONE
2018 		Novel gateway binary vectors for rapid tripartite DNA assembly and promoter analysis with various reporters and tags in the liverwort Marchantia polymorpha.
research
 0 / 3 MpPRM MpEF1 MpHSP17.8A1
Mahboubi, K. E., et al.
Current Biology
2021 		Plant biology- Two green revolutions mediated by DELLA.
research
 0 / 3 MpPIF MpGRAS6 MpSLY1
Tan, X., et al.
Cell
2025 		A pair of LysM receptors mediates symbiosis and immunity discrimination in Marchantia.
research
 2 / 1 MpEF1 MpLYR MpCERK1
Briones-Moreno, A., et al.
Nature Plants
2023 		DELLA functions evolved by rewiring of associated transcriptional networks.
research
 1 / 2 MpEF1 MpGRAS6 MpGRAS7
Mulvey, H., et al.
Current Biology
2023 		RHO GTPase of plants regulates polarized cell growth and cell division orientation during morphogenesis.
research
 1 / 2 MpEF1 MpROP MpROPGEF
Willems, A., et al.
Plant Physiology
2023 		Plant lineage-specific PIKMIN1 drives APC/CCCS52A2 E3-ligase activity-dependent cell division.
research
 1 / 2 MpEF1 MpACTIN7 MpPKN1
Imran, S., et al.
Plant & Cell Physiology
2022 		Distinct Functions of the Atypical Terminal Hydrophilic Domain of the HKT Transporter in the Liverwort Marchantia polymorpha.
research
 1 / 2 MpEF1 MpHKT MpAMT1
Kanazawa, M., et al.
Plant & Cell Physiology
2019 		Regulation of the poly(A) status of mitochondrial mRNA by poly(A) specific ribonuclease is conserved among land plants.
research
 2 / 1 MpEF1 MpAGS1 MpAHG2
Suetsugu, N., et al.
Proceeding of the National Academy of Sciences USA
2016 		RPT2-NCH1 subfamily of NPH3-like proteins is essential for the chloroplast accumulation response in land plants.
research
 1 / 2 MpEF1 MpNCH1 MpNPH3
Li, M., et al.

2020e 		Ancestral function of the phytochelatin synthase C-terminal domain in inhibition of heavy metal-mediated enzyme overactivation Journal of Experimental Botany
research
 0 / 3 MpAPT MpPCS MpACT
Teyssier E, Grat S, Landry D, Ouradou M, Rich MK, Fort S, Keller J, Lefebvre B, Delaux PM, Mbengue M.
Proceedings of the National Academy of Sciences of the United States of America
2025 		A plant Lysin Motif Receptor-Like Kinase plays an ancestral function in mycorrhiza.
research
 0 / 3 MpLYK1 MpLYR MpEF1a
Poveda, J.
Frontiers in Plant Science
2024 		Analysis of Marchantia polymorpha–microorganism interactions- basis for understanding plant–microbe and plant–pathogen interactions.
review
 0 / 3 MpLYK1 MpR2R3-MYB14 MpPBLa
Jibran, R., et al.
The Plant Journal
2024a 		The auronidin flavonoid pigments of the liverwort Marchantia polymorpha form polymers that modify cell wall properties.
research
 1 / 2 MpCHIL MpR2R3-MYB14 MpBT
Rana P, Edathil Kadangodan A, Koley P, Ghosh R, Pullagurla NJ, Naik HC, Mondal P, Gayen S, Laha D.
Nature chemical biology
2025 		GA-independent DELLA regulation by inositol pyrophosphate in a nonvascular land plant.
research
 2 / 1 MpGRAS6 MpVIH MpBES1
Schröder, P., et al.
Plant Cell & Environment
2023 		B-GATA factors are required to repress high-light stress responses in Marchantia polymorpha and Arabidopsis thaliana.
research
 1 / 2 MpGCAM1 MpACTIN7 MpGATA4
Guo, H., et al.
Plant and Cell Physiology
2018 		MpAMT1;2 From Marchantia polymorpha Is A High-Affinity, Plasma Membrane Ammonium Transporter.
research
 1 / 2 MpACTIN7 MpSUT4 MpAMT1;2
Yamashita Y, Hagiwara Y, Hashimoto K, Ogawa M, Hoshino S, Suzuki H, Iwano M, Ishikawa T, Nishihama R, Kuchitsu K.
Current biology : CB
2026 		Indispensable roles of RBOH-mediated ROS production in development and morphogenesis of Marchantia polymorpha.
research
 2 / 1 MpYUC2 MpRBOHA MpRBOHB
Yoshimura N, Kato H, Yoshikawa M, Sakai Y, Matsuura H, Takahashi K, Takezawa D, Kanazawa T, Furuya T, Ueda T, Kondo Y, Fukaki H, Ishizaki K.
Plant & cell physiology
2026 		Transcriptional control of gemma dormancy via dual pathways in Marchantia polymorpha.
research
 3 / 0 MpCYCD_1 MpHYP MpHYPNOS
Kobayashi Y, Tachibana M, Kimura N, Hatada M, Koeduka T, Ohta A, Shimizu BI, Nomura T, Kato Y, Ishizaki K, Mizutani M, Kubo H, Takanashi K.
Plant & cell physiology
2026 		Reconstruction of a Bis(bibenzyl) Biosynthetic Pathway through Analysis of 4-Coumarate:CoA Ligase and Double-Bond Reductase in Marchantia polymorpha.
research
 2 / 1 Mp4CL3 MpDBR1 MpMYB2
Jia, Q., et al.
PNAS
2022 		Origin and early evolution of the plant terpene synthase family.
research
 3 / 0 MpCPS MpDTPS3 MpDTPS5
Hashimoto, T., et al.
Physiologia Plantarum
2023 		Enhanced Ca2+ binding to EF-hands through phosphorylation of conserved serine residues activates MpRBOHB and chitin-triggered ROS production.
research
 1 / 2 MpPBLa MpRBOHA MpRBOHB
Vries, S. d., et al.
Philosophical Transactions of the Royal Society B
2024 		Biotic interactions, evolutionary forces and the pan-plant specialized metabolism.
review
 0 / 2 MpNPR MpNPR1
Mercadal J, Ferreira-Guerra M, Caño-Delgado AI, Ibañes M.
Cell reports
2026 		Cell-type specification at criticality underlies rhizoid patterning in the liverwort Marchantia polymorpha.
research
 2 / 0 MpFRH1 MpRSL1
Crespo, I., et al.
Structure 33: doi: 10.1016/j.str.2025.1002.1006
2025 		The structure and function of the DNA binding domain of class B MpARF2 share more traits with class A AtARF5 than to that of class B AtARF1.
research
 1 / 1 MpARF3 MpARF2
Althoff, F., et al.
International Journal of Molecular Biosciences
2020 		Transformation of Riccia fluitans, an Amphibious Liverwort Dynamically Responding to Environmental Changes.
research
 0 / 2 MpWIP MpEF1
Pfeifer, L., et al.
Journal of Experimental Botany
2022 		The cell wall of hornworts and liverworts- innovations in early land plant evolution?
research
 0 / 2 MpRRT3 MpRRT1
Li, D., et al.
New Phytologist
2022a 		A transporter of 1- aminocyclopropane-1-carboxylic acid affects thallus growth and fertility in Marchantia polymorph.
research
 1 / 1 MpACS2 MpLHT1
Tong, M., et al.
Molecular Plant
2022 		Rise of the ethylene biosynthesis machinery from the Cb-S lyase.
research
 0 / 2 MpACS2 MpACS1
Carey, S. B., et al.
Science Advances
2021b 		Gene-rich UV sex chromosomes harbor conserved regulators of sexual development.
research
 0 / 2 MpFGMYB MpRKD
Poormassalehgoo A, Kaniecka E, Mirzaei M, Goto-Yamada S.
Scientific reports
2025 		Optimization of selection agent concentrations and expanding G418 utility for gentamicin resistance in Marchantia polymorpha.
research
 0 / 2 Mp1g18080
Wu, Y.-F., et al.
Molecules
2018c 		Molecular Diversity of Alkenal Double Bond Reductases in the Liverwort Marchantia paleacea.
research
 2 / 0 MpDBR MpMDBRL
Salminen, T. A., et al.
Plants
2018 		Deciphering the Evolution and Development of the Cuticle by Studying Lipid Transfer Proteins in Mosses and Liverworts.
review
 0 / 2 MpLTPG3 MpEF1
Nemec-Venza, Z., et al.
New Phytologist
2022 		CLAVATA modulates auxin homeostasis and transport to regulate stem cell identity and plant shape in a moss.
research
 0 / 2 MpCLV1 MpCLE2
Geng, Y., et al.
Current Biology
2024 		A conserved GRAS-domain transcriptional regulator links meristem indeterminacy to sex determination in Ceratopteris gametophytes.
research
 0 / 2 MpCLV1 MpYUC2
Bythell-Douglas, R., et al.
BMC Biology
2017 		Evolution of strigolactone receptors by gradual neo-functionalization of KAI2 paralogues.
research
 0 / 2 MpKAI2B MpKAI2A
Furudate, H., et al.
Plant & Cell Physiology
2023 		A Polyphenol Oxidase Catalyzes Aurone Synthesis in Marchantia polymorpha.
research
 1 / 1 MpAS1 MpR2R3-MYB14
Guan, Y., et al.
Nature Communications
2018 		Gene refashioning through innovative shifting of reading frames in mosses.
research
 0 / 2 MpHr MpHr
Shimizu, S., et al.
Journal of Plant Research
2024 		SENSITIVE TO FREEZING2 is crucial for growth of Marchantia polymorpha under acidic conditions.
research
 2 / 0 MpGGGT2 MpGGGT1
Jeong J, Lee Y, Choi G.
Nature communications
2025 		Both phytochrome A and phyB interact with PHYTOCHROME-INTERACTING FACTORs through an evolutionary conserved phy-APA interaction.
research
 2 / 0 MpPHY MpPIF
Pashkovskiy, P., et al.
Plant Physiology and Biochemistry
2023 		Impact of varying light spectral compositions on photosynthesis, morphology, chloroplast ultrastructure, and expression of light-responsive genes in Marchantia polymorpha.
research
 1 / 1 MpPHY MpPIF
Nishihama, R., et al.
Journal of Plant Research
2015 		Phytochrome-mediated regulation of cell division and growth during regeneration and sporeling development in the liverwort Marchantia polymorpha.
research
 1 / 1 MpPHY MpEF1
Raval PK, García García C, Sanchez MS, Gould SB.
Molecular biology and evolution
2025 		Evolutionary Refinement of Mitochondrial and Plastid Targeting Sequences Coincides with the Late Diversification of Land Plants.
research
 2 / 0 MpPAP9 MpMME1
Suzuki, H., et al.
Journal of Plant Research
2020 		Positional cues regulate dorsal organ formation in the liverwort Marchantia polymorpha.
research
 0 / 2 MpSYP13B MpHSP17.8A1
Saito, M., et al.
Current Biology
2023 		A bHLH heterodimer regulates germ cell differentiation in land plant gametophytes.
research
 2 / 0 MpLRL MpBNB
Tanizawa, Y., et al.
bioRxiv: doi.org/10.1101/2025.1103.1130.646155
2025 		MarpolBase: Genome database for Marchantia polymorpha featuring high quality reference genome sequences.
research
 0 / 2 MpLRL MpAP2L1
Jimenez-Aleman, G. H., et al.
Pharmaceuticals
2021 		SARS-CoV-2 Fears Green- The Chlorophyll Catabolite Pheophorbide A Is a Potent Antiviral.
research
 2 / 0 MpCOI1 MpC1HDZ
Matsui, H., et al.
Plant & Cell Physiology
2019 		Isolation of natural fungal pathogens from Marchantia polymorpha reveals antagonism between salicylic acid and jasmonate during liverwort-fungus interactions.
research
 1 / 1 MpCOI1 MpDIR17
Tanaka, M., et al.
Phytochemistry
2016b 		Direct evidence of specific localization of sesquiterpenes and marchantin A in oil body cells of Marchantia polymorpha L.
research
 0 / 2 MpC1HDZ MpSYP12B
Horiuchi, Y., et al.
New Phytologist
2025 		Physcomitrium LATERAL SUPPRESSOR genes promote formative cell divisions to produce germ cell lineages in both male and female gametangia.
research
 0 / 2 MpRKD MpBNB
Yamaoka, S., et al.
Current Biology
2018 		Generative Cell Specification Requires Transcription Factors Evolutionarily Conserved in Land Plants.
research
 1 / 1 MpRKD MpBNB
Messant, M., et al.
Bioenergetics
2021 		Evolutive differentiation between alga- and plant-type plastid terminal oxidase- study of plastid terminal oxidase PTOX isoforms in Marchantia polymorpha. Biochimica et biophysica acta.
research
 2 / 0 MpPTOXa MpPTOXb
Lu, K.-J., et al.
Proceedings of the National Academy of Sciences USA
2019a 		Evolution of vascular plants through redeployment of ancient developmental regulators.
research
 2 / 0 MpTMO5 MpLHW
Sakamoto, Y., et al.
Communications Biology
2022 		Improved clearing method contributes to deep imaging of plant organs.
research
 0 / 2 MpRSL1 MpEF1
Flores-Sandoval, E., et al.
PLoS Genetics
2015 		A simple auxin transcriptional response system regulates multiple morphogenetic processes in the liverwort Marchantia polymorpha.
other
 1 / 1 MpSHI MpIAA
Vernié, T., et al.
PNAS
2025 		Conservation of symbiotic signaling since the most recent common ancestor of land plants.
research
 0 / 2 MpEF1 MpU6-1
Lam, A. H. C., et al.
Current Biology
2024 		Evolution of endosymbiosis-mediated nuclear calcium signaling in land plants.
research
 1 / 1 MpEF1 MpDMI1
Robinson, K., et al.
Journal of Experimental Botany
2024 		An efficient sulfadiazine selection scheme for stable transformation in the model liverwort Marchantia polymorpha.
research
 0 / 2 MpEF1 MpTUB1
Bonfanti, A., et al.
PNAS
2023 		Stiffness transitions in new walls post-cell division differ between Marchantia polymorpha gemmae and Arabidopsis thaliana leaves.
research
 0 / 2 MpEF1 MpTUB1
Furumizu, C., et al.
Frontiers in Plant Science
2021b 		The RGF-GLV-CLEL Family of Short Peptides Evolved Through Lineage-Specific Losses and Diversification and Yet Conserves Its Signaling Role Between Vascular Plants and Bryophytes.
research
 1 / 1 MpEF1 MpRGF
Yasui, Y., et al.
Current Biology
2019 		GEMMA CUP- ASSOCIATED MYB1, an Ortholog of Axillary Meristem Regulators, Is Essential in Vegetative Reproduction in Marchantia polymorpha
research
 1 / 1 MpEF1 MpGCAM1
Yu, Z., et al.
PLOS One
2018b 		Droplet-based microfluidic analysis and screening of single plant cells.
research
 0 / 2 MpEF1 MpHSP17.8
Kopischke, S., et al.
Plant Methods
2017 		TALEN-mediated genome-editing approaches in the liverwort Marchantia polymorpha yield high efficiencies for targeted mutagenesis.
research
 1 / 1 MpEF1 MpNOP1
Nishihama, R., et al.
Plant and Cell Physiology
2016 		Conditional Gene Expression/Deletion Systems for Marchantia polymorpha Using its Own Heat-Shock Promoter and Cre/loxP-Mediated Site-Specific Recombination.
research
 1 / 1 MpEF1 MpHSP17.8A1
Eklund, D. M., et al.
The Plant Cell
2015 		Auxin produced by the indole-3-pyruvate pathway regulates development and gemmae dormancy in the liverwort Marchantia polymorpha.
research
 1 / 1 MpEF1 MpYUC2
Ishizaki, K., et al.
PLOS one
2015 		Development of Gateway Binary Vector Series with Four Different Selection Markers for the Liverwort Marchantia polymorpha.
research
 0 / 2 MpEF1 MpHSP17.8A1
Hani, U., et al.
Plant Physiology and Biochemistry
2024 		Manganese deficiency alters photosynthetic electron transport in Marchantia polymorpha.
research
 1 / 1 Mp4g02720 MpACT1
Zheng, B., et al.
Nature Communications
2019 		EMS1 and BRI1 control separate biological processes via extracellular domain diversity and intracellular domain conservation.
research
 0 / 2 MpLRR-RLK.59 MpTPD1
Baez, L. A., et al.
Plant Molecular Biology
2022 		Cell wall integrity regulation across plant species.
review
 0 / 2 MpFER MpTHE
Sullivan S, Hermanowicz P, Higa T, Waksman T, Gotoh E, Horne A, Henderson L, Prochwicz A, Wada M, Nakai M, Suetsugu N, Łabuz J, Christie JM.
The Plant cell
2026 		Reversible phosphorylation of NPH3/RPT2-like proteins regulates phototropin receptor signaling.
research
 1 / 1 MpPP2C_E MpPHOT
Taylor-Kearney, L. J., et al.
ACS Bio Med Chem Au
2022 		Plant Cysteine Oxidase Oxygen-Sensing Function Is Conserved in Early Land Plants and Algae. 2 / 0 MpERF23 MpPCO
Hanaki Y, Suzuki H, Nakamura S, Nakagawa S, Tada K, Matsumoto H, Kimata Y, Sato Y, Ueda M.
Plant Methods
2025 		A simple and versatile plasma membrane staining method for visualizing living cell morphology in reproductive tissues across diverse plant species.
research
 0 / 2 MpSUN MpEC
Hanawa M, Hirano S, Sasaki K, Takahashi H, Kodama Y.
Biochemical and biophysical research communications
2026 		Phototropin can trigger the chloroplast accumulation response from multiple subcellular locations in Marchantia polymorpha.
research
 2 / 0 MpPHOT MpNCH1
Sakata, M., et al.
Plant Direct
2019 		Relationship between relocation of phototropin to the chloroplast periphery and the initiation of chloroplast movement in Marchantia polymorpha.
research
 1 / 1 MpPHOT MpNCH
Takahashi, H., et al.
PeerJ
2020 		CRUNC- a cryopreservation method for unencapsulated gemmae of Marchantia polymorpha.
research
 0 / 2 MpPHOT MpTUB
Solly, J. E., et al.
Current Biology
2017 		Regional Growth Rate Differences Specified by Apical Notch Activities Regulate Liverwort Thallus Shape.
research
 0 / 2 MpTAA MpYUC2
Savadogo, E. H., et al.
Planta
2021 		Gene expression of PLAT and ATS3 proteins increases plant resistance to insects.
research
 2 / 0 Mp5g16600 Mp6g17080
Shukla V, Axelsson E, Hisanaga T, Haseloff J, Berger F, Romani F.
PLoS genetics
2026 		Chromatin state architecture governs transcription factor accessibility across plant genomes.
research
 2 / 0 MpE(z)1 MpKNOX2
Furumizu, C., et al.
Physiologia Plantarum
2024 		Land plant peptide signaling- What we know—and don't know—about its evolution.
research
 0 / 2 MpCLE2 MpRPK2
Fernie, A. R.
Current Biology
2019 		Evolution: An Early Role for Flavonoids in Defense against Oomycete Infection.
research
 0 / 2 MpR2R3-MYB14 MpPR6a
Iwano, M., et al.
Plant Physiology
2024 		MID1- COMPLEMENTING ACTIVITY regulates cell proliferation and development via Ca2+ signaling in Marchantia polymorpha.
research
 1 / 1 MpMCA MpCYCD_1
Liu, X.-Y., et al.
Plant Physiology and Biochemistry
2017 		The isolation and functional characterization of three liverwort genes encoding cinnamate 4-hydroxylase.
research
 2 / 0 MpC4H MpC4H2
Bharadwaj, P. S., et al.
Frontiers in Plant Science
2022 		The plant hormone ethylene promotes abiotic stress tolerance in the liverwort Marchantia polymorpha.
research
 2 / 0 MpEIN3 MpCTR1
Mase, H., et al.
Communicative & Integrative Biology
2022 		Establishment and application of novel culture methods in Marchantia polymorpha- persistent tip growth is required for substrate penetration by rhizoids.
research
 1 / 1 MpWDL MpNEK1
Yamamoto, Y., et al.
Phytochemistry
2015 		Functional analysis of allene oxide cyclase, MpAOC, in the liverwort Marchantia polymorpha.
research
 1 / 1 MpDIR17 MpABI1
Zhang, J.-Z., et al.
Antioxidants
2022a 		Spatial Distribution, Antioxidant Capacity, and Spore Germination-Promoting Effect of Bibenzyls from Marchantia polymorpha.
research
 2 / 0 MpSTCS1A Mp4CL
Hiwatashi, T., et al.
Current Biology
2019 		The RopGEF KARAPPO Is Essential for the Initiation of Vegetative Reproduction in Marchantia polymorpha. 1 / 1 MpROP KARAPPO
Sun, Y., et al.
Proceedings of the National Academy of Sciences USA
2019 		A ligand-independent origin of abscisic acid perception.
research
 2 / 0 MpPYL1 MpABI1
Komatsu, K., et al.
Plant Cell and Environment
2020 		Decoding ABA and osmostress signalling in plants from an evolutionary point of view.
research
 0 / 2 MpPYL1 MpABI1
McDonald, T. R., et al.
Frontiers in Plant Science
2016 		Evolution of Electrogenic Ammonium Transporters (AMTs)
research
 2 / 0 MpAMT1;4 MpAMT1;5
Stephani, M., et al.
eLife
2020 		A cross-kingdom conserved ER-phagy receptor maintains endoplasmic reticulum homeostasis during stress.
research
 0 / 2 MpATG8 MpC53
Li QQ, Li H, De Moor J, Sbrocca I, Xiang Y, Yang SL, Jiang ZY, He L, Wang JY, Herbst J, van de Cotte B, De Smet I, Cimini S, De Veylder L.
The Plant cell
2026 		Ancestral and divergent roles of the Marchantia polymorpha ATR kinase in maintaining genome integrity and clonal fitness.
research
 2 / 0 MpATM MpATR
Annese D, Romani F, Grandellis C, Ives L, Frangedakis E, Buson FX, Molloy JC, Haseloff J.
The Plant journal : for cell and molecular biology
2025 		Semi-automated workflow for high-throughput Agrobacterium-mediated plant transformation.
research
 0 / 2 MpEF1a MpUBE2
Foyer CH.
Current biology : CB
2026 		Plant development: RBOH genes.
other
 0 / 2 MpRBOHA MpRBOHB
Landberg, K., et al.
New Phytologist
2020 		Studies of moss reproductive development indicate that auxin biosynthesis in apical stem cells may constitute an ancestral function for focal growth control.
research
 0 / 2 MpTAR MpYUC
Du, N.-H., et al.
Journal of Natural Products: 10.1021/acs.jnatprod.1023c00880
2024 		Efficient Production of Flavonoid Glucuronides in Escherichia coli Using Flavonoid O-Glucuronosyltransferases Characterized from Marchantia polymorpha.
research
 2 / 0 MpUGT736B1 MpUGT742A1
Xiong, R.-L., et al.
Antioxidants
2022 		Identification and Characterization of Two Bibenzyl Glycosyltransferases from the LiverwortMarchantia polymorpha.
research
 2 / 0 MpUGT737B1 MpUGT741A1
Castel, B., et al.
Molecular Plant
2024 		Immunobiodiversity- Conserved and specific immunity across land plants and beyond.
research
 0 / 1 MpNPR
Morita M, Yamato KT.
Journal of plant research
2025 		The MpCAFA gene encodes a ciliary protein required for spermatozoid motility in the liverwort Marchantia polymorpha.
research
 1 / 0 MpCAFA
Yoshikawa, m., et al.
Phytochemistry
2018 		Wounding stress induces phenylalanine ammonia lyases, leading to the accumulation of phenylpropanoids in the model liverwort Marchantia polymorpha.
research
 1 / 0 MpPAL
Martin-Arevalillo, R., et al.
PLOS Genetics
2019 		Evolution of the Auxin Response Factors from charophyte ancestors.
research
 0 / 1 MpARF3
Chater, C. C. C., et al.
Plant Physiology
2017 		Origins and Evolution of Stomatal Development.
research
 0 / 1 MpWIP
Nguyen-Kim, H., et al.
International Journal of Molecular Sciences
2020 		The CellWall PAC (Proline-Rich, Arabinogalactan Proteins, Conserved Cysteines) Domain-Proteins Are Conserved in the Green Lineage.
research
 0 / 1 Mp1g10970
Liu, H., et al.
Phytochemistry
2019 		The identification and functional characterization of three liverwort class I O-methyltransferases.
research
 1 / 0 MpOMT1
Berger, F.
The EMBO Journal
2019 		An ancient antisense-driven RNA switch drives plant sex determination.
research
 1 / 0 MpFGMYB
Renner, S. S., et al.
Nature Plants
2021 		Plant sex chromosomes defy evolutionary models of expanding recombination suppression and genetic degeneration.
research
 0 / 1 MpFGMYB
Carey, S., et al.
Genes
2021a 		The Diversity of Plant Sex Chromosomes Highlighted through Advances in Genome Sequencing.
review
 0 / 1 MpFGMYB
Ma, J., et al.
Molecular Plant
2022 		Major episodes of horizontal gene transfer drove the evolution of land plants.
research
 1 / 0 Mp1g22390
Wallner, E.-S., et al.
Current Biology
2024 		Reproducibly oriented cell divisions pattern the prothallus to set up dorsoventrality and de novo meristem formation in Marchantia polymorpha.
research
 1 / 0 MpC3HDZ
Duckett, J. G.
Current Biology
2024 		Plant biology- Mapping meristem morphogenesis in Marchantia.
research
 0 / 1 MpC3HDZ
Cammarata, J., et al.
PNAS
2022 		Cytokinin– CLAVATA cross-talk is an ancient mechanism regulating shoot meristem homeostasis in land plants.
research
 0 / 1 MpCLV1
He, J., et al.
International Journal of Molecular Sciences
2019 		Evolution Analysis of the Fasciclin-Like Arabinogalactan Proteins in Plants Shows Variable Fasciclin-AGP Domain Constitutions.
research
 0 / 1 MpFLA
Sakai, Y., et al.
Plant Biotechnology
2022 		Migration of prospindle before the first asymmetric division in germinating spore of Marchantia polymorpha.
research
 0 / 1 MpTUB2
Soriano G, Monforte L, Del-Castillo-Alonso MÁ, Tomás-Las-Heras R, Jenkins GI, Kondou Y, Martínez-Abaigar J, Núñez-Olivera E.
Journal of experimental botany
2026 		Evolutionarily conserved but not indispensable for survival: plastic UVR8 functionality in Marchantia under laboratory and field conditions.
research
 1 / 0 MpUVR8
Soriano, G., et al.
The New Phytologist
2018 		Evolutionary conservation of structure and function of the UVR8 photoreceptor from the liverwort Marchantia polymorpha and the moss Physcomitrella patens.
research
 1 / 0 MpUVR8
Pashkovskiy P, Voronkov A, Voloshin R, Vereshchagin M, Abramova A, Khalilova L, Ivanova T, Khudyakova A, Kreslavski VD, Allakhverdiev SI.
Plant physiology and biochemistry : PPB
2025 		Impact of red and far-red light ratios on the physiological parameters and expression of light-responsive genes in Marchantia polymorpha during de-etiolation.
research
 1 / 0 MpPHY
Breuninger, H., et al.
Current Biology
2016 		Diversification of a Transcription Factor Family Led to the Evolution of Antagonistically Acting Genetic Regulators of Root Hair Growth.
research
 1 / 0 MpLRL
Betsuyaku, S.
Plant Cell & Physiology
2020 		The Rise of Evolutionary Molecular Plant–Microbe Interactions (EvoMPMI).
research
 0 / 1 MpCOI1
Romani F, Farías S, Rojas AC, Florent SN, Carella P, Schornack S, Bowman JL, Federici F, Moreno JE.
Plant physiology
2026 		Elucidating the ancestral role of Class I HD-Zip transcription factors in land plants.
research
 1 / 0 MpC1HDZ
Nowaczyński F, Nicoletti R, Zimowska B, Ludwiczuk A.
Molecules (Basel, Switzerland)
2025 		Marchantia polymorpha as a Source of Biologically Active Compounds.
review
 0 / 1 MpC1HDZ
Davies, K. M., et al.
New Phytologist
2022 		All roads lead to Rome alternative biosynthetic routes in plant specialised metabolism.
research
 0 / 1 MpC1HDZ
Koi, S., et al.
Current Biology
2016 		An Evolutionarily Conserved Plant RKD Factor Controls Germ Cell Differentiation.
research
 1 / 0 MpRKD
Yamaoka, S., et al.
Plant Reproduction
2021 		Regulation of gametangia and gametangiophore initiation in the liverwort Marchantia polymorpha.
research
 0 / 1 MpRKD
Resemann, H. C., et al.
Nature Plants
2021 		Convergence of sphingolipid desaturation across over 500 million years of plant evolution.
research
 0 / 1 MpDES5
D'Ippolito, R. A., et al.
Journal of Biological Chemisty
2019 		Protamines from liverwort are produced by posttranslational cleavage and C-terminal di- aminopropanelation of several male germ–specific H1 histones.
research
 1 / 0 MpPRM
Higo, A., et al.
Plant and Cell Physiology
2016 		Transcriptional Framework of Male Gametogenesis in the Liverwort Marchantia polymorpha L.
research
 1 / 0 MpPRM
Sanobar, N., et al.
Viruses
2021 		Investigating the Viral Suppressor HC-Pro Inhibiting Small RNA Methylation through Functional Comparison of HEN1 in Angiosperm and Bryophyte.
research
 1 / 0 MpHEN1
Shen, C., et al.
New Phytologist
2025 		Ancient large-scale gene duplications and diversification in bryophytes illuminate the plant terrestrialization.
research
 0 / 1 MpRSL1
Kurtovic, K., et al.
New Phytologist
2025 		The role of indole-3-acetic acid and characterization of PIN transporters in complex streptophyte alga Chara braunii.
research
 0 / 1 MpPIN1
Zheng, X., et al.
New Phytologist
2020 		A study of male fertility control in Medicago truncatula uncovers an evolutionarily conserved recruitment of two tapetal bHLH subfamilies in plant sexual reproduction.
research
 0 / 1 MpBNB
Valeevaa, L. R., et al.
Molecular Biology
2022 		cis-Prenyltransferases of Marchantia polymorpha- Phylogenetic Analysis and Perspectives for Use as Regulators of Antimicrobial Agent Synthesis.
research
 1 / 0 MpCPT7
Westermann, j., et al.
Current Biology
2019 		An Evolutionarily Conserved Receptor-like Kinases Signaling Module Controls Cell Wall Integrity During Tip Growth
research
 1 / 0 MpFER
Noguchi M, Fukushima T, Wakasugi S, Kodama Y.
Planta
2026 		Phototropin monitors actual temperature, not temperature difference, to regulate temperature-dependent chloroplast movement via cis-trans autophosphorylation mode switching in Marchantia polymorpha.
research
 1 / 0 MpPHOT
Balcerowicz M.
The Plant journal : for cell and molecular biology
2025 		Phosphorylation in two acts: Marchantia phototropin undergoes sequential cis- and trans-autophosphorylation.
research
 1 / 0 MpPHOT
Noguchi, M., et al.
The Plant Journal
2024 		Phototropin switches between cis- and trans-autophosphorylation in light-induced chloroplast relocation in Marchantia polymorpha.
research
 1 / 0 MpPHOT
Yong, L.-K., et al.
Photochemistry and Photobiology: 10.1111/php.13869
2023 		Functional comparison of phototropin from the liverworts Apopellia endiviifolia and Marchantia polymorpha.
research
 1 / 0 MpPHOT
Kato, S., et al.
Journal of Photochemistry & Photobiology, B: Biology
2021 		The photo-thermochemical properties and functions of Marchantia phototropin encoded by an unduplicated gene in land plant evolution.
research
 1 / 0 MpPHOT
Fujii, Y., et al.
PLoS ONE
2020 		The cold-induced switch in direction of chloroplast relocation occurs independently of changes in endogenous phototropin levels.
research
 1 / 0 MpPHOT
Komatsu, A., et al.
Human Press, Springer Nature, New York
2019 		Observation of Phototropic Responses in the Liverwort Marchantia polymorpha, pp. 53-61 in Phototropism: Methods and Protocols, edited by K. T. Yamamoto.
other
 1 / 0 MpPHOT
Fujii, Y., et al.
Proceeding of the National Academy of Sciences USA
2017 		Phototropin perceives temperature based on the lifetime of its photoactivated state.
research
 1 / 0 MpPHOT
Kodama, Y.
Plos One
2016 		Time Gating of Chloroplast Autofluorescence Allows Clearer Fluorescence Imaging In Planta
research
 1 / 0 MpPHOT
Song, K., et al.
Frontiers in Plant Science
2021 		EARLY STARVATION 1 Is a Functionally Conserved Protein Promoting Gravitropic Responses in Plants by Forming Starch Granules.
research
 0 / 1 MpESV1
Chalak, K., et al.
Biochemistry
2024 		Functional Conservation of the DDP1-type Inositol Pyrophosphate Phosphohydrolases in Land Plant.
research
 1 / 0 MpDDP1
Hsu CY, Hsu CH, Chang HY, Lu KJ.
Plant & cell physiology
2025 		Exploring the formation and permeability of plasmodesmata in the liverwort, Marchantia polymorpha.
research
 0 / 1 MpERF20
van Dop, M., et al.
Cell
2020 		DIX Domain Polymerization Drives Assembly of Plant Cell Polarity Complexes.
research
 1 / 0 MpSOK
Hamashima, N., et al.
Plant Biotechnology
2019 		A gain-of-function T-DNA insertion mutant of Marchantia polymorpha hyper-accumulates flavonoid riccionidin A.
research
 1 / 0 MpR2R3-MYB14
Luo KY, Wang SP, Yang L, Luo SL, Cheng J, Dong Y, Ning Y, Wang WB.
Frontiers in plant science
2025 		Evolutionary landscape of plant chalcone isomerase-fold gene families.
research
 0 / 1 MpCHI
Pitsili E, Maric A.
Plant physiology
2025 		Fight to survive: Marchantia synthesizes newly identified metabolites in response to wounding.
other
 0 / 1 MpGH3A
Mikkelsen, M. D., et al.
Communications Biology
2021 		Ancient origin of fucosylated xyloglucan in charophycean green algae.
research
 1 / 0 MpXUT1
Yan X, Peng B, Miao Z, Li L, Zhang Y, Hu X, Tang K.
International journal of biological macromolecules
2026 		Benchmarking genetic elements for high-level protein expression using a novel Marchantia polymorpha transient expression system.
research
 0 / 1 MpACT1
Zhang, X., et al.
Advanced Science:
2024a 		Morphological Innovation Drives Sperm Release in Bryophytes
research
 1 / 0 MpNAC5
Hayashida, Y., et al.
Journal of Plant Research
2021 		Characterization of the cAMP phosphodiesterase domain in plant adenylyl cyclase- cAMP phosphodiesterase CAPE from the liverwort Marchantia polymorpha.
research
 1 / 0 MpCAPE
Yamamoto, C., et al.
Scientific Reports
2021 		Distribution of adenylyl cyclase/ cAMP phosphodiesterase gene, CAPE, in streptophytes reproducing via motile sperm.
research
 1 / 0 MpCAPE
Kasahara, M., et al.
Scientific Reports
2016 		An adenylyl cyclase with a phosphodiesterase domain in basal plants with a motile sperm system.
research
 1 / 0 MpCAPE
Kriegshauser, L., et al.
Plant Cell
2021 		Function of the HYDROXYCINNAMOYL-CoA-SHIKIMATE HYDROXYCINNAMOYL TRANSFERASE is evolutionarily conserved in embryophytes.
research
 1 / 0 MpHCT
Hoernstein, S. N. W., et al.
Communications Biology
2023 		A deeply conserved protease, acylamino acidreleasing enzyme (AARE), acts in ageing in Physcomitrella and Arabidopsis.
research
 0 / 1 Mp7g15830
Furuya, T., et al.
Frontiers in Plant Science
2019 		A Method for Evaluating Three-Dimensional Morphological Features- A Case Study Using Marchantia polymorpha.
research
 1 / 0 MpAN
Duan, Z., et al.
The Plant Journal
2020 		Characterization of ancestral myosin XI from Marchantia polymorpha by heterologous expression in Arabidopsis thaliana.
research
 1 / 0 MpMYOSIN_XI-2
Ishizaki, K.
Frontiers in Plant Science
2015 		Development of schizogenous intercellular spaces in plants
review
 0 / 1 MpNOP1
Bui, L. T., et al.
Journal of Experimental Botany
2019 		Conservation of ethanol fermentation and its regulation in land plants.
research
 1 / 0 MpADH1
Tabeta H, Uzaki M, Hirai MY.
Plant signaling & behavior
2025 		Spatial metabolomics as a new avenue in plant developmental biology: insights into serine biosynthesis during spermatogenesis in Marchantia polymorpha.
research
 1 / 0 MpPGDH
Okamura, E., et al.
Biochemical Journal
2021 		Diversified amino acid-mediated allosteric regulation of phosphoglycerate dehydrogenase for serine biosynthesis in land plants.
research
 1 / 0 MpPGDH
Lindström Battle AL, Sweetlove LJ.
Current opinion in plant biology
2025 		Bryophytes as metabolic engineering platforms.
review
 0 / 1 MpPGDH
Rivera-Moreno M, Bono M, Infantes L, Rodriguez PL, Albert A.
Proceedings of the National Academy of Sciences of the United States of America
2026 		Evolutionary-based remodeling of ABA receptors reveals the structural basis of hormone perception and regulation.
research
 1 / 0 MpPYL1
Ekwealor, J. T. B., et al.
Current Biology
2023 		Sex chromosomes- How to make a hermaphrodite.
research
 0 / 1 MpBPCU
Guerrero, S., et al.
Journal of Integrative Plant Biology
2024 		Proteomic dynamics revealed sex-biased responses to combined heat-drought stress in Marchantia.
research
 0 / 1 MpACT
Tan GZH, Koh HYK, Poh ZY, Trusov Y, Krishnamoorthi S, Goh K, Cabral Oliveira C, Botella JR, Urano D.
Nature communications
2025 		Cationic amino acid transporters (CAT) enhance accumulation and susceptibility to the systemic herbicide L-phosphinothricin.
research
 0 / 1 MpACT7
Koshimizu, S., et al.
New Phytologist
2022 		Phylogenetic distribution and expression pattern analyses identified a divergent basal body assembly protein involved in land plant spermatogenesis.
research
 1 / 0 MpBLD10
Rico-Resendiz F, Pri-Tal O, Raia P, Moretti A, Chen H, Yu J, Broger L, Fuchs C, Hothorn LA, Loubéry S, Hothorn M
Proceedings of the National Academy of Sciences of the United States of America
2026 		Plant Kelch phosphatases are Ser/Thr phosphatases involved in cell cycle regulation.
research
 1 / 0 MpBSLM
Gao, S., et al.
PLoS ONE
2024b 		Molecular cloning and functional analysis of 4- coumarate- CoA ligases from Marchantia paleacea and their roles in lignin and flavanone biosynthesis.
research
 0 / 1 MpCHS
Adaramodu OM, Gregory BD.
Developmental cell
2026 		A lineage-specific autophagic mechanism of P-body turnover.
other
 0 / 1 MpDCP1
Beraldo, C., et al.
New Phytologist
2024 		How a liverwort reacts to wounding- tracing the evolution of defence responses in the nonvascular plant Marchantia polymorpha.
other
 1 / 0 MpGLR
Xu, L., et al.
Nature Plants
2019 		Identification of vacuolar phosphate efflux transporters in land plants.
research
 1 / 0 MpGlpT
Campanella, J. J., et al.
Plant Physiology
2018 		Evidence for exaptation of the Marchantia polymorpha M20D peptidase MpILR1 into the tracheophyte auxin regulatory pathway.
research
 1 / 0 MpILR1
Johansen, W., et al.
Plant Physiology
2016 		The DEK1 Calpain Linker Functions in Three-Dimensional Body Patterning in Physcomitrella patens.
research
 0 / 1 MpLG3
Fang, H., et al.
Scientific Reports
2017 		Ancestor of land plants acquired the DNA-3- methyladenine glycosylase (MAG) gene from bacteria through horizontal gene transfer.
research
 0 / 1 MpMAG
Tang, H., et al.
Plant Communications
2024 		Divergence of trafficking and polarization mechanisms for PIN auxin transporters during land plant evolution.
research
 1 / 0 MpPINZ
Zhang, Y., et al.
New Phytologist
2020a 		Directional auxin fluxes in plants by intramolecular domain– domain coevolution of PIN auxin transporters.
research
 0 / 1 MpPINZ
Trujillo-Esquivel E, Lorenzo-Manzanarez JL, Espinal-Centeno A, Méndez-Alvarez D, Aguilar-Cruz A, Brieba LG, Cruz-Ramírez A.
The Plant cell
2026 		The Marchantia polymorpha recombinase MpRAD51 is at the crossroads of morphogenesis and the DNA damage response.
research
 1 / 0 MpRAD51
Kawamura S, Shimokawa E, Ito M, Nakamura I, Kanazawa T, Iwano M, Sun R, Yoshitake Y, Yamaoka S, Yamaguchi S, Ueda T, Kato M, Kohchi T.
Plant & cell physiology
2026 		A SABATH family enzyme regulates development in part via the gibberellin-related pathway in the liverwort Marchantia polymorpha.
research
 1 / 0 MpSABATH2
Raval PK, Thaler NK, Mitchell C, Lozano-Quiles M, Kajander T, Djamriani DW, Reiners J, Smits SH, Butcher SJ, Battersby BJ, Gould SB.
bioRxiv : the preprint server for biology
2026 		Structure determination and dual targeting of a plant TACO1 identifies its ancient role as an organelle translation regulator.
research
 1 / 0 MpTACO1
Duminil P, Herrfurth C, Haslam TM, Feussner I.
Journal of experimental botany
2026 		Setaphyte VERY-LONG-CHAIN FATTY ACYL DESATURASES impact glycerolipid and sphingolipid metabolism.
research
 1 / 0 MpVFAD-LIKE