Mp8g00880



Description

Annotation

Database ID Description
Gene3D G3DSA:1.20.5.110 -
ProSiteProfiles PS50892 v-SNARE coiled-coil homology domain profile.
CDD cd15843 R-SNARE
SMART SM01270 Longin_2
Gene3D G3DSA:3.30.450.50 Longin domain
SUPERFAMILY SSF58038 SNARE fusion complex
Pfam PF00957 Synaptobrevin
PANTHER PTHR21136 SNARE PROTEINS
CDD cd14824 Longin
ProSitePatterns PS00417 Synaptobrevin signature.
Pfam PF13774 Regulated-SNARE-like domain
PRINTS PR00219 Synaptobrevin signature
FunFam G3DSA:3.30.450.50:FF:000011 Vesicle-associated membrane protein 714
ProSiteProfiles PS50859 Longin domain profile.
FunFam G3DSA:1.20.5.110:FF:000004 Vesicle-associated membrane protein 7
SUPERFAMILY SSF64356 SNARE-like
KEGG K08515 vesicle-associated membrane protein 7
KOG KOG0859 Synaptobrevin/VAMP-like protein; [U]
MapolyID Mapoly0064s0109 -
GO GO:0016192 vesicle-mediated transport
GO GO:0016020 membrane

Nomenclature

Gene symbol Product Transcript ID Status
MpVAMP71 Ortholog of Arabidopsis VAMP7 genes Published

Associated Literature (AI-based literature mining, Beta-version)

Ortholog of Arabidopsis VAMP7 genes; The transcript is detected in thalli, antheridiophores, archegoniophores, and sporelings. Citrine-tagged MpVAMP71 driven by the cauliflower mosaic virus 35S promoter is localized to punctate compartments and the vacuolar membrane. (from nomenclature)

2 core 5 peripheral

Minamino, N., et al. (2022) · Development  research experimental subject
R-SNARE (VAMP71); mCitrine-tagged to track endomembrane remodeling during spermiogenesis in M. polymorpha.
Minamino, N., et al. (2017) · Journal of Plant Research  research experimental subject
Vacuolar R-SNARE; during spermatogenesis it localizes to spherical endomembrane structures, marking dynamic reorganization of the endomembrane system in spermatids.
Aggarwal, B., et al. (2024) · RNA Biology  research citation background
Cited from prior work as an example M. polymorpha miRNA-target module (MpmiR11670.1-Mp8g00880).
Bowman, J. L., et al. (2022) · Plant Cell  review citation comparator
Marchantia gene cited in Bowman et al. (2022) model-system review
Kanazawa, T., et al. (2016) · Plant and Cell Physiology  research sequence comparator
VAMP71 R-SNARE; SNARE family inventory.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp8g00880.1 chr8:1091181..1094602 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.