Mp1g13670



Description

Annotation

Database ID Description
Coils Coil Coil
Pfam PF03908 Sec20
PANTHER PTHR12825 BNIP1-RELATED
KEGG K08497 protein transport protein SEC20
KOG KOG1666 V-SNARE; N-term missing; [U]
MapolyID Mapoly0019s0137 -
GO GO:0005783 endoplasmic reticulum
GO GO:0031201 SNARE complex
GO GO:0005484 SNAP receptor activity
GO GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum

Nomenclature

Gene symbol Product Transcript ID Status
MpSEC20 Ortholog of Arabidopsis SEC20 gene Published

Associated Literature (AI-based literature mining, Beta-version)

Ortholog of Arabidopsis SEC20 gene; The transcript is detected in thalli, antheridiophores, archegoniophores, and sporelings. Citrine-tagged MpSEC20 driven by the cauliflower mosaic virus 35S promoter is localized to the endoplasmic reticulum. (from nomenclature)

0 core 1 peripheral

Kanazawa, T., et al. (2020) · Nature Communications  research experimental tool
ER SNARE marker; compartment control.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g13670.1 chr1:13929884..13935632 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g13670.2 chr1:13930580..13935214 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g13670.3 chr1:13930580..13935214 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.