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Many transcription factor families have evolutionarily conserved binding motifs in plants.

Zenker S, Wulf D, Meierhenrich A, Viehoever P, Becker S, Eisenhut M, Stracke R, Weisshaar B, Brautigam A. · 2025 · Plant Physiology   research

doi:10.1093/plphys/kiaf205   PMID:40408265   PMC12142463

Linked genes (13)  12 core 1 peripheral

Gene ID	Name	Evidence / Role	Function (this paper)
Mp4g22430	Mp1R-MYB7	experimental subject	M. polymorpha 1R-MYB TF assayed by ampDAP-seq; yielded TFBM GATNA.
Mp3g05000	Mp1R-MYB8	experimental subject	M. polymorpha 1R-MYB TF assayed by ampDAP-seq; yielded the TFBM TAGGG.
Mp1g19210	MpBHLH27	experimental subject	M. polymorpha bHLH TF tested by ampDAP-seq; yielded TFBM C(A/C)ACTTG (E-box-like), supporting bHLH motif conservation.
Mp4g12420	MpBHLH44	experimental subject	M. polymorpha bHLH TF tested by ampDAP-seq; yielded the canonical E-box TFBM CACGTG.
MpVg00350	MpBPCV	experimental subject	M. polymorpha BBR/BPC-family TF assayed by ampDAP-seq; yielded the GAGAGA TFBM.
Mp3g02320	MpC1HDZ	experimental subject	M. polymorpha HD-Zip I/II TF assayed by ampDAP-seq; yielded TFBM (A/C)ATNAT, representing the homeodomain family.
Mp3g20990	MpDEL1	experimental subject	M. polymorpha E2F/DP-family TF assayed by ampDAP-seq; yielded TFBM (G/C)GCGGG.
Mp1g03950	MpGATA2	experimental subject	M. polymorpha C2C2-GATA TF assayed by ampDAP-seq; yielded a GATA-type TFBM (GATC).
Mp4g11910	MpNAC3	experimental subject	M. polymorpha NAC TF tested by ampDAP-seq in this study (41,258 binding sites), used as the NAC family representative to assess TFBM conservation.
Mp2g14310	MpRVE	experimental subject	M. polymorpha RVE (1R-MYB/REVEILLE-type) TF assayed by ampDAP-seq; yielded the TFBM GATATT.
Mp1g24950	MpWRKY11	experimental subject	M. polymorpha WRKY TF assayed by ampDAP-seq in this study; yielded the WRKY-typical TFBM TTGAC (682 binding sites), supporting motif conservation across plants.
Mp6g16800	MpWRKY14	experimental subject	M. polymorpha WRKY TF assayed by ampDAP-seq here; yielded TFBM TTGAC (27,902 binding sites), showing conserved WRKY binding specificity.
Mp4g11760	MpMADS2	citation comparator	Cited as a comparator: the Marchantia MADS-box TF MpMADS2 binds the conserved CArG box, illustrating deep conservation of MADS binding specificity.