Mp3g13250



Description

Annotation

Database ID Description
CDD cd03506 Delta6-FADS-like
Pfam PF00173 Cytochrome b5-like Heme/Steroid binding domain
SUPERFAMILY SSF55856 Cytochrome b5-like heme/steroid binding domain
Pfam PF00487 Fatty acid desaturase
PIRSF PIRSF015921 FA_sphingolip_des
Gene3D G3DSA:3.10.120.10 -
SMART SM01117 Cyt_b5_2
PANTHER PTHR19353 FATTY ACID DESATURASE 2
FunFam G3DSA:3.10.120.10:FF:000007 Sulfite oxidase, mitochondrial
ProSiteProfiles PS50255 Cytochrome b5 family, heme-binding domain profile.
KEGG K00508 linoleoyl-CoA desaturase [EC:1.14.19.3]
KOG KOG4232 Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase; [I]
MapolyID Mapoly0050s0117 -
GO GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water
GO GO:0016491 oxidoreductase activity
GO GO:0016020 membrane
GO GO:0006629 lipid metabolic process

Nomenclature

Gene symbol Product Transcript ID Status
MpDES5 Δ5 fatty acid desaturase Published
MpFAD7 Secondary metabolism enzyme Provisional

Associated Literature (AI-based literature mining, Beta-version)

Δ5 fatty acid desaturase; MpDES5 mediates two Δ5-desaturation reactions, dihomo-γ-linolenic acid (DGLA; 20:3Δ8,11,14) to arachidonic acid (AA;20:4Δ5,8,11,14) in the n-6 pathway, and eicosatetraenoic acid (ETA; 18:4Δ8,11,14,17) to eicosapentaenoic acid (EPA; 20:5Δ5,8,11,14,17) in the n-3 pathway. (from nomenclature)

1 core 1 peripheral

Kneeshaw, S., et al. (2022) · PNAS  research experimental subject
Desaturase converting eicosatetraenoic acid (ETA) into EPA. Mpdes5 mutants were analyzed for EPA/ETA production and downstream jasmonate biosynthesis.
Resemann, H. C., et al. (2021) · Nature Plants  research sequence comparator
Delta-5 sphingolipid desaturase of M. polymorpha; used as a reference sequence in a phylogenetic study of sphingolipid-desaturase convergence across land plants.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp3g13250.1 chr3:13799574..13804599 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.