MpVg00470



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF00447 HSF-type DNA-binding
Coils Coil Coil
PANTHER PTHR10015 HEAT SHOCK TRANSCRIPTION FACTOR
FunFam G3DSA:1.10.10.10:FF:000057 Heat shock transcription factor 1
Gene3D G3DSA:1.10.10.10 -
ProSitePatterns PS00434 HSF-type DNA-binding domain signature.
PRINTS PR00056 Heat shock factor (HSF) domain signature
SMART SM00415 hsfneu3
SUPERFAMILY SSF46785 "Winged helix" DNA-binding domain
KEGG K09419 heat shock transcription factor, other eukaryote
KOG KOG0627 Heat shock transcription factor; [K]
MapolyID MapolyY_B0005 -
GO GO:0043565 sequence-specific DNA binding
GO GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO GO:0005634 nucleus
GO GO:0006357 regulation of transcription by RNA polymerase II
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0006355 regulation of DNA-templated transcription
GO GO:0034605 cellular response to heat

Nomenclature

Gene symbol Product Transcript ID Status
MpHSF3 transcription factor, HSF Published

Associated Literature (AI-based literature mining, Beta-version)

Male (V chromosome) variant of MpHSFA1; Mphsfa1V knockout and overexpression/ChIP-seq lines analyzed under heat. Promoter contains 4 HSEs and is expressed higher than MpHSFA1U; direct binding targets identified, mediating thermotolerance and metabolic adjustment but not GABA accumulation.

1 core 0 peripheral

Wu, T.-Y., et al. (2022a) · Plant Cell  research experimental subject
Male (V chromosome) variant of MpHSFA1; Mphsfa1V knockout and overexpression/ChIP-seq lines analyzed under heat. Promoter contains 4 HSEs and is expressed higher than MpHSFA1U; direct binding targets identified, mediating thermotolerance and metabolic adjustment but not GABA accumulation.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
MpVg00470.1 chrV:2673639..2684178 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.