Mp1g05970



Description

Annotation

Database ID Description
PANTHER PTHR35460 TRNA LIGASE 1
MobiDBLite mobidb-lite consensus disorder prediction
Coils Coil Coil
Pfam PF08302 Fungal tRNA ligase phosphodiesterase domain
MapolyID Mapoly0005s0012 -
GO GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation
GO GO:0003972 RNA ligase (ATP) activity
GO GO:0005524 ATP binding

Nomenclature

No gene symbols are registered for this gene.

Associated Literature (AI-based literature mining, Beta-version)

Target of MpmiR11865*, encoding a tRNA ligase 1 protein. Its expression inversely correlates with the miRNA by RT-qPCR, with the cleavage site located in the 3'-UTR.

1 core 0 peripheral

Aggarwal, B., et al. (2024) · RNA Biology  research experimental subject
Target of MpmiR11865*, encoding a tRNA ligase 1 protein. Its expression inversely correlates with the miRNA by RT-qPCR, with the cleavage site located in the 3'-UTR.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g05970.1 chr1:6326599..6341604 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g05970.2 chr1:6326601..6341604 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g05970.3 chr1:6326601..6341604 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g05970.4 chr1:6326601..6341604 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.