| Database | ID | Description |
|---|---|---|
| Coils | Coil | Coil |
| ProSitePatterns | PS00350 | MADS-box domain signature. |
| PANTHER | PTHR48019 | SERUM RESPONSE FACTOR HOMOLOG |
| Gene3D | G3DSA:3.40.1810.10 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction |
| PRINTS | PR00404 | MADS domain signature |
| CDD | cd00265 | MADS_MEF2_like |
| SUPERFAMILY | SSF55455 | SRF-like |
| ProSiteProfiles | PS50066 | MADS-box domain profile. |
| FunFam | G3DSA:3.40.1810.10:FF:000028 | Agamous-like MADS-box protein AGL66 isoform A |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) |
| ProSiteProfiles | PS51297 | K-box domain profile. |
| SMART | SM00432 | madsneu2 |
| KEGG | K09264 | MADS-box transcription factor, plant |
| KOG | KOG0014 | MADS box transcription factor; [K] |
| MapolyID | Mapoly0174s0011 | - |
| GO | GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
| GO | GO:0045944 | positive regulation of transcription by RNA polymerase II |
| GO | GO:0005634 | nucleus |
| GO | GO:0006357 | regulation of transcription by RNA polymerase II |
| GO | GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding |
| GO | GO:0003700 | DNA-binding transcription factor activity |
| GO | GO:0046983 | protein dimerization activity |
| GO | GO:0003677 | DNA binding |
| GO | GO:0006355 | regulation of DNA-templated transcription |
| GO | GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpMADS1 | transcription factor, MIKC-type MADS-box protein 1 | Published |
transcription factor, MIKC-type MADS-box protein 1; Genome paper MADS1: Mapoly0174s0011.1 (from nomenclature)
0 core 1 peripheral
Sequences: |
Gene UTR + CDS + intron |
| >Mp4g12490.1 CTCCAACTGT GTATACGTGT TCTTACCCCC CCAACCTTCA AGTCTGCTCG CTTTGCTGCG ACTGTGCCAT TTACTACTAC TTCCTTCCTG CCTTCCTTCC TTCCCTCCCT GCCCCCCTTC TCTTCATCCT TCATCAACCC TAGGCAAGGT CCACTATCCT CTCTCTCTCT CTTGCAACTC ACCCACTGCA GCAACTCCCT CTCTCTCTCT CTCTACCTCT CTCCCCTCCT CTCCTTTCCC TCCCTATCCT TTCACAAACA AAAAAAAGGC TTGGGCTCTC ATTCGTTCTC TTTCTCTCTA GGCTCGTCTG CGCGCTGCTG CTGCCGGTGC TCTAGCGAGT CTGTTCCTGG CTGTCTCCTG GGCTGCACTC GGATCCATCC TCCCTACCTG CCTCCCTTCC TTACTTGTGT GCTCACACTC CACACTCGTA TGCCCTACGC TCGACCTCGA CTGTCGTATA TCAGCCTGTT GCAAAGCTTC CGGTACCTCG ACCTCGACTT CGGCCTCGGC TTCTGTCAGT CGCTCCTTAG AAGTGCTACT TAGTGGCAGT AGGTCTGTTC TCGTAGTGAG TGAGTGAGCG AGTGCGTCGA CGAGGAGTCC CGCGCGCACG GCAATTGGAA TCTATAGGAA TTTGGAGCTG CTGCACAGAT GGGAATTCGC AGAGCGTGAA TACTGGGACA TGGACAACGT ATCCGGCTTT CTCACCCTCG TGGTCGAATG CAGCTCCCTC TAGACAGATA GCCCGCAAGC CCCCTCGAGA GCCCCCGGCG CGCACGAGCA GGATGACGGT TTGAGAGACC CGGTCGCAGT GTTAGTCCCC CGCGAGAACG TCCCAAGCCC TGCGCTGCAG ACCGTTGCGT CGGCTAGCCC CGGCAGCCAT CGGAGCTCCA GCGGTTCGAG GAGAGGAGCT TGTTGAACAG TGGCCGGAAC CCTACCCCGC CTGCCTTGCA TCGGCCTTCC ATCGGTCACT GCCCTCGCTG CTGCTGCACA AGGACCGAGT CTTCCGAGGG CGATCTTTGG AAGCTGCCGC TCCCCTCGAA GCCGAGCGGC GGATTTTAGG CGCAGGAAGG AAAGGTTTTT CTCAGGTTTC CGGGCCTTGT TTCTGATCGT CAGGCAAGAT GGGGAGGGTC AAGCTGGAAA TTAAGAAGAT CGAGAATCCC ACGAACCGGC AGGTCACATA CTCGAAGCGC AGGAATGGGC TGATCAAGAA AGCGTACGAG CTCTCCGTGC TATGCGACAT AGACATTGCG GTTATCATGT TCTCGCCTTC CGGCAAGCTT ACGCAGTTTT GCAAGAATGA CAGGTGCACC ATCTTCGTCA TCTGCCATCT TCTCCTAGAC CGCTCATTTG ACTCCGGAGA TTGCCCTCCG AACTCCTTCC GATCTTTGTA TGGAAGTCTT TTGCTGTTGA ATGAGATGCG ATTGTACCGG GGGACCTGGA TAGAGTCAAT TTCACGCTAG TGCATAGGCT GGATCAACTC CCTCGCCCGC AAAGCTCCGG CATGAATTGT GGATATTATG GGGCACAGCT TCAGACGGAG CATTGCATAT TGGCACAAGG CATGGAGGGT CCGGCAATGC TTTCGTGGTC TTTAGCTCGC GTGTTGGCGA CGAGGAAACA GGCTTTTGTT ATCACAGTAC ACCGGAAGAT CAGAATTTGC GCCTGACACG TTCTTCCTCT TTGATTGCAG AATCGAAGAT GTTATTACTC GGTTTGCGAA CACTCCTCTC CACGAGAGAA CGAAAAGGTG CACTGCCCAC CGTCTTGAGA TTCTGACAAT TGCTTCAGAT TTTCCACCGC GTGTGCCGCG TGATTTTCAT GCCACAAATT TGACATCAGC GACATGTGTT TATTGGGTAC TAACTTCTGC TTGTTGCTTT GCATGCGATC CGTGCACCTC CTTCTCACCA TATCCGGTCC AACAGAAAAT TTGAGAATCT GGAGGTAAGA TTATCCTCAA GAAAGCATTT TTACGTCCAC CGGATCGCTA AGCCGTCATG AAGTATCCAT AGTTGCCAAG TCCATGAATT GATTGGCGTT GGCGAGATGA CTCTCACCGC ATGTGACGCT CATTCTGTGT CTGTGGGTGT CGTTGCGACT GCAGTATCTC AACAAAGCGA TACGAAAGCT CAACAGCGAG CGAGAGATGG AAGGCCAGCA ACCAAGGTAT CAGCACGAAC TCGTCTTGCT TCTTATATTT GGGACGCAAT AAATCTGTAA TCGTGGATTA GTCGCCCCGC GAACCGGGAC TCGAAGGTGG ATTTTCTTCC CGAGGTCAGG ACATTGCTCA CCCGTTGTCG TGTGGCGTTT GCGTGACAGG GGGATGGGGT ATGGCGAACA CAACTCGCTC GAGGTTGAGG TGAGCACTCT CGGTGCATAT TCCGAAATAT TCCTTTACGT AATATCGCTT GTCGACTGTA GAGGCCTGCC GACCGTCGCC GGCTCACAGC CATGAGAACA GTCCTTTGCG CGCCTTCTTG GCATTCATGA TTTTGCACCA AAAGCAGTGC CATGTCTCGG AGCATGGGGC CTCGAACTGC CTTTGTTTTA ACGATGCAAT GTCCGTGCTA CAGGAGCTCC AAGCCACTCT CAAGAAAGTT CTCATGGAGA AGCAGTTTTT CGAGCAGAAG GCCAGGTGCG TCCCGTCTCT CGCTGCGCTG GATAATTCCA TTCCGCTAAA ATCTAGGAGT CAACGCTTCT CGGAGCCTAG ACTTTTTTCC GAGTCCGAGT GACCGAACCG CCTGTCATTA TGTGGGCCGT GCGCCGTGCA CTATGGTTTG AGGCGCTGCT GCAGTTGCCG TGCATCAGGC CGGTTCACGA GATCCCAGAG GTTCTAACTC CGTCTTTGCC GTGGCGCGCA GATTGTTCCA AGGCGAAGAA TCCATCAACA GTCTGACCTC TATGAACCAG CTGGTGGCAA TCGAGCGAGA ATTAGAGCAA GCGTTGGTGA AGGTCAGAGA GCGAAAGGGT CAGCTGGGTC AAGAGGAGTC TCAGCTGGCA CTTATGCGCC AGGTACTTGT CGTGCCCTCT GTCTGGGTCG ACATTTTGCC TCACCATCTT TCGAATTCCA ATGTTTTATG TGTCCAGTAG TCAACGAGTA GTAGGGGCTT CCAAACGATC CCATTGCGCT CCTATTTTCC AGACGATCTT TCGCTTGCTG AACTATGCTT CTAGCGGTAC CGATTATGCA GCGGCATAAG GAATTAATCC TTGTCCTCGA GTTTGCCTGG ATCCGCATCC GTCCCTCATT GTGGCGCCGG AATTTCTGTG GTGCAGCAAA ACTTGCTACA GCATGGCACG TTTGTACAAC AAATGATGGA GATGCCTGCC CGAGGAGGAA CGTCCAATCT GAGCGATGGT CAAAGTACGG CTACCAATAT CGGCGGCGGA CAAGGATCTC AATTTCACTC GTGGATGGAT CACCGGGTCA ATCAGGATGG ATACATGGAT TCTGCGCCAA CGTCAATGTC GATGATGAGT GCTTCTCAGA TGAGGTATTA CTCTATCGAG GTGCCTTATC AAACAACACT CGAGAAGGAA GAATGAAGAT TTGCAAACCC CTTGGAACGA AGGTGTGCTA CGCATTGAAT GAATGTTAGG TAGTTGTCAT GTTCTAGTGA ATTGTGCTGG GTGCTTGCCT CGAGGATCAT GCCGGTTTGT CCGATTGATA ACCAATTTCA TCTTGGAATT TTTGTGGGGT TCGGGTTGTA GGGAAACGGG AGGCAACTCG GAGTCAACTG CGTCTTTCTA CCAAGGGGCA TCGCAGGCCC AGCAGATGCC GCTGGGCGGC CACGGCAATC ACGGCAACCA ATTAGAGCTG CGGGGTGGTG ACGGGGAATC AAACACGAAC TTTTTTCATG GAGCGAAAAC TGAAGCCGGA GTCCAGTTTT TCCCTGGCGG CTCGCAGGCC CAATTAGTCC CTCTCTCAGG CCACGGCAGT CAGCTGGAAT TAAGAGGTGG TGATTCAGAA GCGAATTCGG GATTTTATGG AGGGCTGCAG CAGCAACAAC AGCAACAGCT TCCAGCTGTG TCCCACTCGA GTCAAGTCGA ATTACGGCAA CAACCCATCA CTTCGTCCGG AATCACTGGG TTTCGCCCGT CCATGATGAA CCAAGGGCTT AGGGTAGGGC CGCAAGGTTT GAGTCTGGAA AATTTTGACG ATCAGAATTA CGAGGCACCC AATTACTACA ATCCGTGATC ATCATAGGCG TGTGTACACT CAGTTTCCTA TTCTTTCCCG TCCTAGATGT AGGAGGTTGG TTTGCTCCCA ATACGGGAGT TTTAGTTGTC CATGTTTAGG ATACTTAGGA TTTTGTAAAA TCTGTTGAGC AAAATAGGTA GAACTGCTCG GATCGTCCAC CAGGCAAGGA GAGGCGAATT GAATCCGAAG AGTAGAGGAG CGAGGGAAGG GAATTACGAT TCAGTCCAAG CACCCGCGTT GTCATACTCC AACAATTGGG GTTTTTCAGT GGCTTACAGA AATCAAAAGA TTTTCTGTTT CGATCGTTGT GAACTGTCGG GTTTGATTGT GTTTTGTTTG CTTTAAGAG |
mRNA UTR + CDS |
| >Mp4g12490.1 CTCCAACTGT GTATACGTGT TCTTACCCCC CCAACCTTCA AGTCTGCTCG CTTTGCTGCG ACTGTGCCAT TTACTACTAC TTCCTTCCTG CCTTCCTTCC TTCCCTCCCT GCCCCCCTTC TCTTCATCCT TCATCAACCC TAGGCAAGGT CCACTATCCT CTCTCTCTCT CTTGCAACTC ACCCACTGCA GCAACTCCCT CTCTCTCTCT CTCTACCTCT CTCCCCTCCT CTCCTTTCCC TCCCTATCCT TTCACAAACA AAAAAAAGGC TTGGGCTCTC ATTCGTTCTC TTTCTCTCTA GGCTCGTCTG CGCGCTGCTG CTGCCGGTGC TCTAGCGAGT CTGTTCCTGG CTGTCTCCTG GGCTGCACTC GGATCCATCC TCCCTACCTG CCTCCCTTCC TTACTTGTGT GCTCACACTC CACACTCGTA TGCCCTACGC TCGACCTCGA CTGTCGTATA TCAGCCTGTT GCAAAGCTTC CGGTACCTCG ACCTCGACTT CGGCCTCGGC TTCTGTCAGT CGCTCCTTAG AAGTGCTACT TAGTGGCAGT AGGTCTGTTC TCGTAGTGAG TGAGTGAGCG AGTGCGTCGA CGAGGAGTCC CGCGCGCACG GCAATTGGAA TCTATAGGAA TTTGGAGCTG CTGCACAGAT GGGAATTCGC AGAGCGTGAA TACTGGGACA TGGACAACGT ATCCGGCTTT CTCACCCTCG TGGTCGAATG CAGCTCCCTC TAGACAGATA GCCCGCAAGC CCCCTCGAGA GCCCCCGGCG CGCACGAGCA GGATGACGGT TTGAGAGACC CGGTCGCAGT GTTAGTCCCC CGCGAGAACG TCCCAAGCCC TGCGCTGCAG ACCGTTGCGT CGGCTAGCCC CGGCAGCCAT CGGAGCTCCA GCGGTTCGAG GAGAGGAGCT TGTTGAACAG TGGCCGGAAC CCTACCCCGC CTGCCTTGCA TCGGCCTTCC ATCGGTCACT GCCCTCGCTG CTGCTGCACA AGGACCGAGT CTTCCGAGGG CGATCTTTGG AAGCTGCCGC TCCCCTCGAA GCCGAGCGGC GGATTTTAGG CGCAGGAAGG AAAGGTTTTT CTCAGGTTTC CGGGCCTTGT TTCTGATCGT CAGGCAAGAT GGGGAGGGTC AAGCTGGAAA TTAAGAAGAT CGAGAATCCC ACGAACCGGC AGGTCACATA CTCGAAGCGC AGGAATGGGC TGATCAAGAA AGCGTACGAG CTCTCCGTGC TATGCGACAT AGACATTGCG GTTATCATGT TCTCGCCTTC CGGCAAGCTT ACGCAGTTTT GCAAGAATGA CAGAATCGAA GATGTTATTA CTCGGTTTGC GAACACTCCT CTCCACGAGA GAACGAAAAG AAAATTTGAG AATCTGGAGT ATCTCAACAA AGCGATACGA AAGCTCAACA GCGAGCGAGA GATGGAAGGC CAGCAACCAA GGGGGATGGG GTATGGCGAA CACAACTCGC TCGAGGTTGA GGAGCTCCAA GCCACTCTCA AGAAAGTTCT CATGGAGAAG CAGTTTTTCG AGCAGAAGGC CAGATTGTTC CAAGGCGAAG AATCCATCAA CAGTCTGACC TCTATGAACC AGCTGGTGGC AATCGAGCGA GAATTAGAGC AAGCGTTGGT GAAGGTCAGA GAGCGAAAGG GTCAGCTGGG TCAAGAGGAG TCTCAGCTGG CACTTATGCG CCAGCAAAAC TTGCTACAGC ATGGCACGTT TGTACAACAA ATGATGGAGA TGCCTGCCCG AGGAGGAACG TCCAATCTGA GCGATGGTCA AAGTACGGCT ACCAATATCG GCGGCGGACA AGGATCTCAA TTTCACTCGT GGATGGATCA CCGGGTCAAT CAGGATGGAT ACATGGATTC TGCGCCAACG TCAATGTCGA TGATGAGTGC TTCTCAGATG AGGGAAACGG GAGGCAACTC GGAGTCAACT GCGTCTTTCT ACCAAGGGGC ATCGCAGGCC CAGCAGATGC CGCTGGGCGG CCACGGCAAT CACGGCAACC AATTAGAGCT GCGGGGTGGT GACGGGGAAT CAAACACGAA CTTTTTTCAT GGAGCGAAAA CTGAAGCCGG AGTCCAGTTT TTCCCTGGCG GCTCGCAGGC CCAATTAGTC CCTCTCTCAG GCCACGGCAG TCAGCTGGAA TTAAGAGGTG GTGATTCAGA AGCGAATTCG GGATTTTATG GAGGGCTGCA GCAGCAACAA CAGCAACAGC TTCCAGCTGT GTCCCACTCG AGTCAAGTCG AATTACGGCA ACAACCCATC ACTTCGTCCG GAATCACTGG GTTTCGCCCG TCCATGATGA ACCAAGGGCT TAGGGTAGGG CCGCAAGGTT TGAGTCTGGA AAATTTTGAC GATCAGAATT ACGAGGCACC CAATTACTAC AATCCGTGAT CATCATAGGC GTGTGTACAC TCAGTTTCCT ATTCTTTCCC GTCCTAGATG TAGGAGGTTG GTTTGCTCCC AATACGGGAG TTTTAGTTGT CCATGTTTAG GATACTTAGG ATTTTGTAAA ATCTGTTGAG CAAAATAGGT AGAACTGCTC GGATCGTCCA CCAGGCAAGG AGAGGCGAAT TGAATCCGAA GAGTAGAGGA GCGAGGGAAG GGAATTACGA TTCAGTCCAA GCACCCGCGT TGTCATACTC CAACAATTGG GGTTTTTCAG TGGCTTACAG AAATCAAAAG ATTTTCTGTT TCGATCGTTG TGAACTGTCG GGTTTGATTG TGTTTTGTTT GCTTTAAGAG |
CDS |
| >Mp4g12490.1 ATGGGGAGGG TCAAGCTGGA AATTAAGAAG ATCGAGAATC CCACGAACCG GCAGGTCACA TACTCGAAGC GCAGGAATGG GCTGATCAAG AAAGCGTACG AGCTCTCCGT GCTATGCGAC ATAGACATTG CGGTTATCAT GTTCTCGCCT TCCGGCAAGC TTACGCAGTT TTGCAAGAAT GACAGAATCG AAGATGTTAT TACTCGGTTT GCGAACACTC CTCTCCACGA GAGAACGAAA AGAAAATTTG AGAATCTGGA GTATCTCAAC AAAGCGATAC GAAAGCTCAA CAGCGAGCGA GAGATGGAAG GCCAGCAACC AAGGGGGATG GGGTATGGCG AACACAACTC GCTCGAGGTT GAGGAGCTCC AAGCCACTCT CAAGAAAGTT CTCATGGAGA AGCAGTTTTT CGAGCAGAAG GCCAGATTGT TCCAAGGCGA AGAATCCATC AACAGTCTGA CCTCTATGAA CCAGCTGGTG GCAATCGAGC GAGAATTAGA GCAAGCGTTG GTGAAGGTCA GAGAGCGAAA GGGTCAGCTG GGTCAAGAGG AGTCTCAGCT GGCACTTATG CGCCAGCAAA ACTTGCTACA GCATGGCACG TTTGTACAAC AAATGATGGA GATGCCTGCC CGAGGAGGAA CGTCCAATCT GAGCGATGGT CAAAGTACGG CTACCAATAT CGGCGGCGGA CAAGGATCTC AATTTCACTC GTGGATGGAT CACCGGGTCA ATCAGGATGG ATACATGGAT TCTGCGCCAA CGTCAATGTC GATGATGAGT GCTTCTCAGA TGAGGGAAAC GGGAGGCAAC TCGGAGTCAA CTGCGTCTTT CTACCAAGGG GCATCGCAGG CCCAGCAGAT GCCGCTGGGC GGCCACGGCA ATCACGGCAA CCAATTAGAG CTGCGGGGTG GTGACGGGGA ATCAAACACG AACTTTTTTC ATGGAGCGAA AACTGAAGCC GGAGTCCAGT TTTTCCCTGG CGGCTCGCAG GCCCAATTAG TCCCTCTCTC AGGCCACGGC AGTCAGCTGG AATTAAGAGG TGGTGATTCA GAAGCGAATT CGGGATTTTA TGGAGGGCTG CAGCAGCAAC AACAGCAACA GCTTCCAGCT GTGTCCCACT CGAGTCAAGT CGAATTACGG CAACAACCCA TCACTTCGTC CGGAATCACT GGGTTTCGCC CGTCCATGAT GAACCAAGGG CTTAGGGTAG GGCCGCAAGG TTTGAGTCTG GAAAATTTTG ACGATCAGAA TTACGAGGCA CCCAATTACT ACAATCCGTG A |
Protein |
| >Mp4g12490.1 MGRVKLEIKK IENPTNRQVT YSKRRNGLIK KAYELSVLCD IDIAVIMFSP SGKLTQFCKN DRIEDVITRF ANTPLHERTK RKFENLEYLN KAIRKLNSER EMEGQQPRGM GYGEHNSLEV EELQATLKKV LMEKQFFEQK ARLFQGEESI NSLTSMNQLV AIERELEQAL VKVRERKGQL GQEESQLALM RQQNLLQHGT FVQQMMEMPA RGGTSNLSDG QSTATNIGGG QGSQFHSWMD HRVNQDGYMD SAPTSMSMMS ASQMRETGGN SESTASFYQG ASQAQQMPLG GHGNHGNQLE LRGGDGESNT NFFHGAKTEA GVQFFPGGSQ AQLVPLSGHG SQLELRGGDS EANSGFYGGL QQQQQQQLPA VSHSSQVELR QQPITSSGIT GFRPSMMNQG LRVGPQGLSL ENFDDQNYEA PNYYNP |