Mp6g00050



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
FunFam G3DSA:1.20.58.70:FF:000003 Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group
Gene3D G3DSA:1.20.58.70 -
CDD cd00179 SynN
ProSiteProfiles PS50192 t-SNARE coiled-coil homology domain profile.
SMART SM00397 tSNARE_6
CDD cd15848 SNARE_syntaxin1-like
ProSitePatterns PS00914 Syntaxin / epimorphin family signature.
FunFam G3DSA:1.20.5.110:FF:000008 Syntaxin 132
SMART SM00503 SynN_4
PANTHER PTHR19957 SYNTAXIN
Pfam PF00804 Syntaxin
Gene3D G3DSA:1.20.5.110 -
SUPERFAMILY SSF47661 t-snare proteins
Coils Coil Coil
Pfam PF05739 SNARE domain
KEGG K08486 syntaxin 1B/2/3
KOG KOG0810 SNARE protein Syntaxin 1 and related proteins; [U]
MapolyID Mapoly0163s0015 -
GO GO:0000149 SNARE binding
GO GO:0016192 vesicle-mediated transport
GO GO:0006906 vesicle fusion
GO GO:0012505 endomembrane system
GO GO:0031201 SNARE complex
GO GO:0006886 intracellular protein transport
GO GO:0005886 plasma membrane
GO GO:0048278 vesicle docking
GO GO:0016021 membrane
GO GO:0006887 exocytosis
GO GO:0016020 membrane
GO GO:0005484 SNAP receptor activity

Nomenclature

Gene symbol Product Transcript ID Status
MpSYP12A Common ortholog of both Arabidopsis SYP11 and SYP12 genes Published

Associated Literature (AI-based literature mining, Beta-version)

Common ortholog of both Arabidopsis SYP11 and SYP12 genes; The transcript is detected in thalli, antheridiophores, archegoniophores, and sporelings. Monomeric-Citrine-tagged MpSYP12A under the regulation of its own regulatory elements is localized to the plasma membrane. (from nomenclature)

3 core 5 peripheral

Melkonian, K., et al. (2022a) · New Phytologist  research experimental subject
Plasma-membrane Qa-SNARE; one of two PM SNAREs whose interactome was mapped by miniTurbo proximity labeling, identifying SNARE-proximal proteins.
Minamino, N., et al. (2022) · Development  research experimental subject
Plasma-membrane-resident Qa-SNARE (SYP12A); followed during organelle/membrane remodeling in spermiogenesis.
Kanazawa, T., et al. (2020) · Nature Communications  research experimental subject
Syntaxin-1/SYP1 homolog (KNOLLE-like); localizes to forming cell plates; KO not recoverable (likely essential), mutant cells enlarged with wall stubs — role in cytokinesis.
Norizuki, T., et al. (2023) · Frontiers in Plant Biology  research experimental comparator
Plasma membrane SNARE whose vacuolar targeting and degradation occurred normally in Mpatg5 mutants, showing autophagy defects are selective.
Romani, F., et al. (2022) · Journal of Experimental Botany  research citation background
Review (liverwort oil bodies): cites MpSYP12A required for cell-plate formation during cytokinesis.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp6g00050.1 chr6:164347..166891 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.