Mp1g28220



Description

Annotation

Database ID Description
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain
Pfam PF04733 Coatomer epsilon subunit
SUPERFAMILY SSF48452 TPR-like
PIRSF PIRSF016478 Epsilon-COP
PANTHER PTHR10805 COATOMER SUBUNIT EPSILON
FunFam G3DSA:1.25.40.10:FF:000140 Coatomer subunit epsilon
KEGG K17268 coatomer subunit epsilon
KOG KOG3081 Vesicle coat complex COPI, epsilon subunit; [U]
MapolyID Mapoly0002s0056 -
GO GO:0006891 intra-Golgi vesicle-mediated transport
GO GO:0005198 structural molecule activity
GO GO:0005515 protein binding
GO GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
GO GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO GO:0030126 COPI vesicle coat

Nomenclature

No gene symbols are registered for this gene.

Associated Literature (AI-based literature mining, Beta-version)

Causal gene of the screened T-DNA mutant; encodes the epsilon COPI subunit (T-DNA in 5' UTR of Mp1g28220). Mpsec28 mutants show rounded oil bodies (circularity 0.82 vs WT 0.45). MpSEC28-mCherry forms ring-shaped structures at the Golgi periphery, colocalizing with COPI markers.

1 core 0 peripheral

Kanazawa, T., et al. (2022) · Frontiers in Plant Science  research experimental subject
Causal gene of the screened T-DNA mutant; encodes the epsilon COPI subunit (T-DNA in 5' UTR of Mp1g28220). Mpsec28 mutants show rounded oil bodies (circularity 0.82 vs WT 0.45). MpSEC28-mCherry forms ring-shaped structures at the Golgi periphery, colocalizing with COPI markers.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g28220.1 chr1:29399492..29408767 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.