Briginshaw, L. N., et al. · 2022 · New Phytologist research
doi:10.1111/nph.18046 PMID:35181887 PMC9311212
| Gene ID | Name | Evidence / Role | Function (this paper) |
|---|---|---|---|
| Mp5g20660 | MpGRAS6 | experimental subject | MpDELLA. Under FR, MpKAN negatively regulates MpDELLA expression, and the two are proposed to act in a common pathway controlling FR responses and gametangiophore formation. |
| Mp3g04970 | MpKAN | experimental subject | MpKAN locus (v6.1 Mp3g04970.1), the KANADI gene studied here. Loss-of-function, complementation and inducible-overexpression lines showed it regulates apical branching, dorsal thallus differentiation and FR-induced gametangiophore formation in the gametophyte. |
| Mp5g14320 | MpTAA | experimental subject | MpTAA, the sole TAA auxin-biosynthesis ortholog. Transcriptomics showed it is upregulated in Mpkan and downregulated upon MpKAN induction; MpKAN-mediated thallus differentiation is proposed to act by downregulating MpTAA and depleting auxin. |
| Mp2g16090 | MpPHY | experimental comparator | Phytochrome; Mpphy mutants grow orthotropically under WL and FR, used as comparative mutant context for FR-regulated growth and positive regulation of MpPIF. |
| Mp3g17350 | MpPIF | citation comparator | PHYTOCHROME-INTERACTING FACTOR that interacts with MpDELLA in the FR pathway regulating gametangium/gametangiophore formation; cited as pathway context. |
| Mp3g23400 | MpEF1 | experimental tool | Promoter (proMpEF1) used to drive the inducible MpKAN-GR transgene for MpKAN overexpression/induction experiments. |
| Mp1g28830 | missing | experimental background | Unannotated gene; listed in Table 1 among DEGs oppositely regulated by loss and induction of MpKAN. |
| Mp2g02350 | missing | experimental background | Protein of unknown function (DUF3455); listed in Table 1 as a candidate MpKAN-regulated DEG. |
| Mp2g13230 | missing | experimental background | Unannotated gene; listed in Table 1 among DEGs oppositely regulated by MpKAN loss and induction. |
| Mp3g17960 | missing | experimental background | Unannotated gene; listed in Table 1 as a candidate MpKAN-regulated DEG. |
| Mp3g21740 | missing | experimental background | Peroxidase/oxygenase; listed in Table 1 among MpKAN-responsive DEGs. |
| Mp4g03600 | missing | experimental background | Sulphite exporter (TauE/SafE); listed in Table 1 as a candidate MpKAN-regulated DEG. |
| Mp4g15440 | missing | experimental background | Indole-3-acetate O-methyltransferase; listed in Table 1 as a candidate MpKAN-regulated DEG. |
| Mp4g16270 | missing | experimental background | Unannotated gene; listed in Table 1 among MpKAN-responsive DEGs. |
| Mp5g00560 | missing | experimental background | Methyltransferase; listed in Table 1 as a candidate MpKAN-regulated DEG. |
| Mp5g14990 | missing | experimental background | Unannotated gene; listed in Table 1 as a candidate MpKAN-regulated DEG. |
| Mp5g16240 | missing | experimental background | EamA-like transporter; listed in Table 1 among MpKAN-responsive DEGs. |
| Mp7g01790 | missing | experimental background | 6-methylsalicylate decarboxylase; listed in Table 1 as a candidate MpKAN-regulated DEG. |
| Mp7g08280 | missing | experimental background | Unannotated gene; listed in Table 1 among MpKAN-responsive DEGs. |
| Mp7g09830 | missing | experimental background | Alpha/beta hydrolase; listed in Table 1 as a candidate MpKAN-regulated DEG. |
| Mp7g11540 | missing | experimental background | 3-phosphoglycerate kinase; listed in Table 1 among MpKAN-responsive DEGs. |
| Mp7g14650 | missing | experimental background | 3-methylcrotonyl-CoA carboxylase; listed in Table 1 as a candidate MpKAN-regulated DEG. |
| Mp7g16380 | missing | experimental background | Ribonuclease III (rnc/DROSHA/RNT1); listed in Table 1 among MpKAN-responsive DEGs. |
| Mp8g18310 | MpBELL1 | experimental background | TALE-homeodomain TF; FR-upregulated in wild-type and still FR-upregulated in Mpkan, indicating MpKAN-independent induction in the transcriptome analysis. |
| Mp3g23300 | MpBNB | experimental background | MpBONOBO TF for gametangium specification; FR-upregulated in wild-type but not FR-upregulated in Mpkan plants, noted in the FR transcriptome comparison. |
| Mp2g03280 | MpCCD7 missing | experimental background | MpCCD7 (9-cis-beta-carotene cleaving dioxygenase); listed in Table 1 as a candidate MpKAN-regulated DEG. |
| Mp2g03050 | MpCHK1 | experimental background | MpCHK1 (cytokinin receptor); listed in Table 1 among genes upregulated in Mpkan and downregulated upon MpKAN induction. |
| Mp6g07050 | MpCLE1 | experimental background | Meristem-associated gene; downregulated together with MpTAA in DEX-treated proMpEF1:MpKAN-GR plants in the transcriptome analysis. |
| Mp1g04680 | MpCYP716 | experimental background | Cytochrome P450; listed in Table 1 as upregulated in Mpkan and downregulated in DEX-treated proMpEF1:MpKAN-GR, a candidate MpKAN-regulated DEG. |
| Mp8g06340 | MpDIR6 | experimental background | Dirigent-like protein; listed in Table 1 as a candidate MpKAN-regulated DEG. |
| Mp1g17210 | MpFGMYB | experimental background | Regulator of female sexual differentiation; FR-upregulated in wild-type females in the expression analysis. |
| Mp8g02960 | MpIPT2 | experimental background | Cytokinin biosynthesis gene; FR-upregulated in wild-type males and females in the transcriptome analysis. |
| Mp1g00270 | MpLOG | experimental background | Cytokinin biosynthesis gene; FR-upregulated in wild-type males and females in the transcriptome analysis. |
| Mp1g21930 | MpLOX5 | experimental background | MpLOX5 (LOX2S lipoxygenase); appears in the Table 1 set of genes oppositely regulated between Mpkan and MpKAN-GR plants. |
| Mp4g12310 | MpLRR-RLK.59 | experimental background | Serine/threonine protein kinase; listed in Table 1 among MpKAN-responsive DEGs. |
| Mp5g06850 | MpOMT19 | experimental background | O-methyltransferase; listed in Table 1 among MpKAN-responsive DEGs. |
| Mp8g11680 | MpPKC11 | experimental background | Polyketide cyclase/dehydrase; listed in Table 1 among MpKAN-responsive DEGs. |
| Mp3g15790 | MpPOD28 | experimental background | Peroxidase; listed in Table 1 among genes oppositely regulated between Mpkan and MpKAN-GR plants. |
| Mp5g19050 | MpR2R3-MYB14 | experimental background | R2R3-MYB master regulator of flavonoid biosynthesis; listed among DEGs upregulated in the Mpkan background. |
| Mp3g10530 | MpRLK-Pelle_RKF3c | experimental background | Serine/threonine protein kinase; listed in Table 1 as a candidate MpKAN-regulated DEG. |