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Salinity stress-responsive transcription factors in the liverwort Marchantia polymorpha.

Tanaka, H., et al. · 2018 · Plant Biotchnology   research

doi:10.5511/plantbiotechnology.18.0501a   PMID:31819734   PMC6879361

Linked genes (6)  5 core 1 peripheral

Gene ID	Name	Evidence / Role	Function (this paper)
Mp5g08310	MpB3-6	experimental subject	Salinity-upregulated B3-family transcription factor (homolog of Arabidopsis ABI3), identified by RNA-Seq (logFC 1.37, lowest FDR 0.0054, most reliable). qRT-PCR confirmed the RNA-Seq expression pattern.
Mp2g00890	MpBHLH2	experimental subject	Salinity stress-responsive bHLH transcription factor in M. polymorpha, identified as strongly upregulated by RNA-Seq (logFC 4.24, FDR 0.0365). qRT-PCR validation was inconsistent with RNA-Seq, suggesting possible false positivity at the chosen threshold.
Mp2g22820	MpBZIP12	experimental subject	Salinity-upregulated bZIP transcription factor (homolog of Arabidopsis ABF2/AREB1), identified by RNA-Seq (logFC 1.57, FDR 0.0161). qRT-PCR confirmed the upregulation pattern seen in RNA-Seq.
Mp1g21450	MpRR-MYB1	experimental subject	Salinity-responsive MYB-related transcription factor, the single strongly downregulated TF by RNA-Seq (logFC -4.86, FDR 0.0405). qRT-PCR validation was inconsistent with RNA-Seq, indicating marginal reliability.
Mp1g09420	MpSBG9	experimental subject	Salinity-upregulated R2R3-MYB transcription factor (homolog of Arabidopsis ATMIXTA/MYB16), identified by RNA-Seq (logFC 1.12, FDR 0.0115). qRT-PCR confirmed the RNA-Seq expression pattern.
Mp3g23400	MpEF1	experimental tool	Reference gene for RT-PCR loading control.