Mp2g00890



Description

Annotation

Database ID Description
SMART SM00353 finulus
Pfam PF14215 bHLH-MYC and R2R3-MYB transcription factors N-terminal
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF00010 Helix-loop-helix DNA-binding domain
Gene3D G3DSA:4.10.280.10 -
ProSiteProfiles PS50888 Myc-type, basic helix-loop-helix (bHLH) domain profile.
SUPERFAMILY SSF47459 HLH, helix-loop-helix DNA-binding domain
PANTHER PTHR46266 TRANSCRIPTION FACTOR TT8
KOG KOG1318 Helix loop helix transcription factor EB; N-term missing; [K]
MapolyID Mapoly0028s0062 -
GO GO:0046983 protein dimerization activity

Nomenclature

Gene symbol Product Transcript ID Status
MpBHLH2 transcription factor, bHLH Published

Associated Literature (AI-based literature mining, Beta-version)

Salinity stress-responsive bHLH transcription factor in M. polymorpha, identified as strongly upregulated by RNA-Seq (logFC 4.24, FDR 0.0365). qRT-PCR validation was inconsistent with RNA-Seq, suggesting possible false positivity at the chosen threshold.

1 core 1 peripheral

Tanaka, H., et al. (2018) · Plant Biotchnology  research experimental subject
Salinity stress-responsive bHLH transcription factor in M. polymorpha, identified as strongly upregulated by RNA-Seq (logFC 4.24, FDR 0.0365). qRT-PCR validation was inconsistent with RNA-Seq, suggesting possible false positivity at the chosen threshold.
Jeon, H.-W., et al. (2024) · New Phytologist  research experimental comparator
bHLH TF (Mp2g00890); MpNPR-dependent gene.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp2g00890.1 chr2:1114896..1119642 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp2g00890.2 chr2:1114896..1119642 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.