| Database | ID | Description |
|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction |
| PANTHER | PTHR46373 | PROTEIN RKD4 |
| ProSiteProfiles | PS51519 | RWP-RK domain profile. |
| Pfam | PF02042 | RWP-RK domain |
| MapolyID | Mapoly0022s0128 | - |
| GO | GO:0003700 | DNA-binding transcription factor activity |
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpRKD | RWP-RK domain (RKD)-containing transcription factor | Published |
RWP-RK domain-containing transcription factor identified as a target of MpmiR319, expressed in the rim and bottom of gemma cups. Expression of a miR319-resistant MpRKD produced gemma/gemma cup-less plants, indicating its repression by miR319 is critical for proper gemma cup formation.
4 core 18 peripheral
Sequences: |
Gene UTR + CDS + intron |
| >Mp3g04030.1 CGGGGGAGGA GAGAGTTCGT CGGGGGAGGA GGGGGGAAGC GAGCAGCAGA AGAGAGAAAA GGGCGCTGGC TATGGCGGCC CAGAGGCTTT GAGGACCGGA GACGAAAGGG AAGGAAGAGC AGCAGCAGGA GAGGAAGAGG AGGGAGAGTG GGAGGGAGGG GAGGGAGCGC AGGTGACGGG AAGGGAGGGA GCGGAGAGAA GAGGAGGCAG GAGGGGGAGA GGCATGTCTT TTTACTCGAG GAAATTGTAA GGAGGGGAAG GGAACGGAGG GGAGGGGAGG GGTGGTGGTG GTGGAGGAGG AAGAGGAGGA GGAGGAGGAG CAGGCGACAG GAGTAAGAGC AGAAGAAGGA AGGGAGAGAG AGGGAGAGAG AGAGAGAGAG AGAGATAGGA GAGGTGGAGC GCGAGACGAG GTATTCTGGG GTGAAATGCG GGATGGGAAG CACCGGCCTG CGCGCCTCTA CATTCCCCGC CGCCTCCTCC TCTTCCCGCT CGCTGCGCGC TATTGCTATT TTCCAGCATC TTCAAAACTT AGGTTCGGAT TTTTCGGACT TTTGCTCGTG GTCGTCGTGT GGTCGTCGTG GTCGTCGTCG TCATTGCGTG ATTTCTCTGT GTCTGCTGCT GCTGCTGCCT CGTCGTCTTC GTCGGTGTGA GTGTGTGTGA GTAAGTGTGT GTGCGAATGT GTGGGTGTCA CTGGTGGCTG GACTGGAGCC TTTTGCGAGG TTTGGAGGAA TGTGAAAGGT TTCTTCCGGT GCCCGGCCTC GTTGTCGCGT CTCGGCCGCA CGTGGTGTGC CGGAGTCGCT GTCAATTGTT TGAACGAGTT CGCTGGGATT GAGGATAATG TCCAAGGAGG CTTGCCCTCT CGTACTTCGG GGCCTGCCTC CTCGCGGTCG CTGCCAGTGC GTGGATTCTG TTCCTCGCCA TCGTTGCATG GTCCCGCGTT CTGCTACCTC GTACCCTCGC GCATTTTGGA GTCAGTTTTT TAGTACCCCT CTCGGCGGGC GAATGTCTCA CAGACCTTGA CGTGCCTGGC ATCGCACTGG TGCCCCTCAC CTCTTGACAC GAGAACCAGA GCTCCGAGTG CATTCCCGTG GATTAGAGGT GAAGTTTCTC GGACTTAGGA TGTCGGAATA TCATCTGACA TCGTCGCTGA ACTCCTCTGA GCTCCCTTAC CCGTGGCGAC ATGCTTGGAC TGCGTAACTT CTACTTTTGC GATTCGTGAA GCGGATTCTG GTTTGAATAA GTTTACGACC ATGGCTGTAT GAATTTTAGC TCATCTGCTA CCTTATCTGC AGCCAAGTCT GCAACTTTCG GAACAGTTGA TCGCACGGTT GTAGGGGCAG AGCTGTATAC CTTCTAGCGC TACGAAACTC CCGTTAAGAA GCAAGAACAA GTCTTTCCTA AGTTCCTGTG TGGTACCCCG TGCCCGTGGC GCAGTTGGGA AGTGAGCATG TACGCAAGTA TGCCTGATGC ATTGGTGGGA CTAGGGGGTT CTCTGTGTGC CCTCTCAGGG ACTAGTGGGA AGTCGCAGTT TCTTCTCGTT GTGTGGAATC CGTTAGAAAT ATTGCTTTCA GGAAGTCACG CTTAGAGGGT TGGAGGAGAT GGTTCTGGGT GGAGCAGCTC CTGGTGTCTT ATTTAGAAGC CTGCGTCGGA TATTGCCCAG TTTCTTCTAA TAACCTGAAT TAAATCCAGA GAACGCCCAC GGTATGCGTT GGCGGATTTT TTTCACTCTG TTTGTTCGGG ACTTAAGATC GCTAGGAGGT GTTCGTTAGG AAATGTATGT TTCATCCTCG AGTGAGCTCC TCGATGTTCG CATATGTTGC CCCGTGATTT CCATGATGGC CTTGATTCTG TCTGGTGGAT GTTTTTGGCC AACGAGTCGT GTCCCGTAGC TTGTTTCTGT TCTTGGTTAT ATGTTTCATC CCAAAGATTT TAATAAATTC TTGCGGTTCC TTCAGAGATC TTCAAAAGTG TTCACCTGTA CACGGAAAAT GGTTCCGTCA CAGCAGTCCA GCAAGAATTC CTGCTCTCTC CGGGCTCGTA CTCTCAAATT AGTGACCCAC TACCATTCTA CTTCAGTACG CCTACGGGTG TCGAACAGTT CATGGGCACC CTCAAGCGCC TGACTGAGTT CGAGCTTTGG CAATGCATAT TGGAATATAG TAGTAATGCA CCTCTTGCTA CTACTGTCGT CCCGTTTCTG AGTGTCACGA GGTATAGGTT CTTCTCACGC AATCGCTGTT TTCAATCTTG ATTCTGATTT GGGCTGGGCG GAAAAGCACA TGTTAGTAAG TAGGCTTCTT TTACCCCTTT AGCCGCAGCT GTTTTGAGCC CTGATCAATT TAGAGCTACG TATGCGAAGG AATATTGCCG TCTTTAGTCA TTGATTCTGG ATTTCTCCCT TGAGCCGCAG GAATCCGCAA TTGAGAACCT TGCCGACTCT GGCGAATGAC CTGATTTTGG TTGAGAAGGC GATCGAAAGA GAGAAATTGT TGCAATGTCC ACCTCTGAGA CATCCGCCTT CACCTAGACA AGAGCAGGAA CACTTGCCGG TGGGAACTCG AGGCTCACCT GAAGACACGA GATCTTGGAA CCCGATCAAG TGGCTACCTA GCACGTCCGC CATGTCTGCT TCTACCGGTC AGTCTGCCGA ATCTAACGAT ACTCGCGAAG ACGGGTTGGG TGATGGATCC AACCTGCAGT TGGAAACCCT GCACGAGTGG GGATCTGATT TAGAACTTGC CAGTCCGCGC ATGTTTGATA CTTGTCTGGG CTCTTCTTGG AGTACAAGCA TTTCGAGCGT CCCGTTCACA GGTTTGTGCC CGTGCTTTTA TGTTGGAGAA TTGTGTTCGC CGTGACCTGC ACAGTTGCAA GCCCTACTCT GCTCCGTTGT CGAAGCTGTG GGAGAAGAGC TTTAGCATTC TTGATCTGAG ATACTATATG CATCTTATAA TTTGGAGATG CGGCTTAGCA CTTGATCCCG CGCCTTTCAT CCAGCTACCA GTTTGAGCGG ATTTAGATCT AGTGCACCGC AAAATTATGG TGCCACCCCT TGTTGTTAGG GTGCTGAGCA TGTTCTATTT CGGGGTTTCA TTCTGAATTT CGTCTTTGGG TGGTGACTCC TTTGCATTAT TTGTACGCAG CTCTGATGTC TGCACCGAGC CCGACTTCGA GCTTAATGAC GAATCACAAA ACTGCTTGCT CTTCTTGGAG CTCTCCAAAT CTTGGACTGA ATTCTCTTAG TGGTACTTTC GATTATCACC TGGACTCTTC GTCCAGCCAG AGCAACTTCG GTCATGGAAG GCTCGCCTTA ACCTATGACT TGCCGAGCCC TGGAGGGAAT TTGAGCTCCT GTCACTCAGA ATCCGTCCCT ATGAGCATGA ATGGTGGGTT GGCGTACAAG GCGCGGAACT CTGCTCCTTT GAGGAAGGCA GTAGAGCGAA CTCGGTCTCA CTGCAGTGAT GAGAGTGTGT GCACGCCTCC CATACTGAAT GAGAGGCAGG GGTCTGGATA TTCTCTTCAC TCCCACTCCC TGCCTCCTCA GGCGACAAAG TTGAGGCTCT CAGATTGTAG CCACGATCTG TCTCCACAAG AGACAAGCTC TTCTAGGCTA ACCGAGACAA GCCTTTCCCG CAAAGATGGC GTTACGACGA GGAATATGCT GGAAAAGGTC TCCGGGACGT CTAATCATCA CCAACGCGGA CCAACGGAGC GGATGACCGA GATCACTCTC AGTGAGCTGT CCAATTACTT CAATATGCCG ATCACACAAG CTTCTAAGGA GCTCAAGGTT GGTCTGACGG TTCTGAAGAA AAGATGCCGG GAGTTCGGAA TACCACGTTG GCCACATCGG AAAATGAAGA GTCTTGACAG TCTTATCCAC AACATTCAGG TGAGTACTCA TCCGTTTCTT TCCAATAAAA ACGCATCTCT GCTTTGTGCG GTGTACAATT TTCGCGGAGC CGTTGGATGC GTTTAAGAAT CAAGGTGAGC CTCATCGTAC TAATCCTGGA GGTAATAGAG GTAATACATG AATACGGCTG CTGGCTGACG CCGTCTGGAA TATGGCGTTT CTTTTGGCGG ATGCGTATCG TAGCACATTG GCAGATGCAG AAGAAGGATT CACGACTAAT GGAGAATTCA CAATGCTTTG CAAATGTACT AAAGATCAGC TTCTTGGAGG ATAAGTAGAG TTTAGTTTGG ATGATAATTA AAGTTCCGTT ACCTCTCGAT TGACTTGTAT GAGATCTCGT TCGCGTTCAC ACCCTCTTAT GCCTTCGTTC TTCTTTCGCT TGCAGGAGCT AGCAAAAGGA CCTGAGGGTA AGACTTCTGC ACCAGTCATG AATGCAGTCA AGGAGCTAGA GCATCAGAAG AAGAGAATGG AGGAGAGGCC TGGAATTGAG CTTGCGGAGC GCACTAAGAG GCTCCGTCAA GCTTGTTTCA AGGCTAGTTA CAAGAAACGC CGACAGGCTC AAACTCTAGC TCAGCAGGAG TCATATGAGG TTTCAGGGGC AGTTCCTGTA GACCAATGTG TCTCAACCCT GGTCTCATGA CATAGGGGCT CCCTTCCGTC CAAAGTTTCA AATCAAATAG AAGCAGGGTT TAACCATGCA GGTATTTACT TAGAAGATGC TACTTGATAT CATAACCTTC CGTTTGCTCC CCCAGACGTC GTCTCGGGGT AGACTCACAA GGAGGTAGAC ATTCGTAGCT GTTGTCTTAG TCGACTACTT GGTGGTGTGG CATCCAGGAC CAGCATTTAG ATGCGAGACC CTGCACACAT ATTTTGAGTG TTTTGCTTGG TGTGTTCCGT GTACCATAGG ACACTCAAGA GGGTTGCCTT GAACTAGATA AGCCAAAAGA CCAAGATGTG ATTTGTGGAT GTTGTCAATC ACATCTTGCT CCAGTGCATG TCTTGTGGCA CTGCGTAGTA TTTAGCTAGC TTTATATTGC ATTAGTTGGA AATTGGACAA GGTACGGTGG GCGGGTCTGT TGTACCCGCC TTGTTAGCCG TTGCACAGAG TATAGAACTC TTTCCAAAGT TTTTTGTTCC AACCGAACAC GACCTATTCT ATGTTTAAAA TACAAGTAAT AGTTCAACTG TGTTGTTTGT AATTTTACAT CGGCGTTATA AAACTTT |
mRNA UTR + CDS |
| >Mp3g04030.1 CGGGGGAGGA GAGAGTTCGT CGGGGGAGGA GGGGGGAAGC GAGCAGCAGA AGAGAGAAAA GGGCGCTGGC TATGGCGGCC CAGAGGCTTT GAGGACCGGA GACGAAAGGG AAGGAAGAGC AGCAGCAGGA GAGGAAGAGG AGGGAGAGTG GGAGGGAGGG GAGGGAGCGC AGGTGACGGG AAGGGAGGGA GCGGAGAGAA GAGGAGGCAG GAGGGGGAGA GGCATGTCTT TTTACTCGAG GAAATTGTAA GGAGGGGAAG GGAACGGAGG GGAGGGGAGG GGTGGTGGTG GTGGAGGAGG AAGAGGAGGA GGAGGAGGAG CAGGCGACAG GAGTAAGAGC AGAAGAAGGA AGGGAGAGAG AGGGAGAGAG AGAGAGAGAG AGAGATAGGA GAGGTGGAGC GCGAGACGAG GTATTCTGGG GTGAAATGCG GGATGGGAAG CACCGGCCTG CGCGCCTCTA CATTCCCCGC CGCCTCCTCC TCTTCCCGCT CGCTGCGCGC TATTGCTATT TTCCAGCATC TTCAAAACTT AGAGATCTTC AAAAGTGTTC ACCTGTACAC GGAAAATGGT TCCGTCACAG CAGTCCAGCA AGAATTCCTG CTCTCTCCGG GCTCGTACTC TCAAATTAGT GACCCACTAC CATTCTACTT CAGTACGCCT ACGGGTGTCG AACAGTTCAT GGGCACCCTC AAGCGCCTGA CTGAGTTCGA GCTTTGGCAA TGCATATTGG AATATAGTAG TAATGCACCT CTTGCTACTA CTGTCGTCCC GTTTCTGAGT GTCACGAGGA ATCCGCAATT GAGAACCTTG CCGACTCTGG CGAATGACCT GATTTTGGTT GAGAAGGCGA TCGAAAGAGA GAAATTGTTG CAATGTCCAC CTCTGAGACA TCCGCCTTCA CCTAGACAAG AGCAGGAACA CTTGCCGGTG GGAACTCGAG GCTCACCTGA AGACACGAGA TCTTGGAACC CGATCAAGTG GCTACCTAGC ACGTCCGCCA TGTCTGCTTC TACCGGTCAG TCTGCCGAAT CTAACGATAC TCGCGAAGAC GGGTTGGGTG ATGGATCCAA CCTGCAGTTG GAAACCCTGC ACGAGTGGGG ATCTGATTTA GAACTTGCCA GTCCGCGCAT GTTTGATACT TGTCTGGGCT CTTCTTGGAG TACAAGCATT TCGAGCGTCC CGTTCACAGC TCTGATGTCT GCACCGAGCC CGACTTCGAG CTTAATGACG AATCACAAAA CTGCTTGCTC TTCTTGGAGC TCTCCAAATC TTGGACTGAA TTCTCTTAGT GGTACTTTCG ATTATCACCT GGACTCTTCG TCCAGCCAGA GCAACTTCGG TCATGGAAGG CTCGCCTTAA CCTATGACTT GCCGAGCCCT GGAGGGAATT TGAGCTCCTG TCACTCAGAA TCCGTCCCTA TGAGCATGAA TGGTGGGTTG GCGTACAAGG CGCGGAACTC TGCTCCTTTG AGGAAGGCAG TAGAGCGAAC TCGGTCTCAC TGCAGTGATG AGAGTGTGTG CACGCCTCCC ATACTGAATG AGAGGCAGGG GTCTGGATAT TCTCTTCACT CCCACTCCCT GCCTCCTCAG GCGACAAAGT TGAGGCTCTC AGATTGTAGC CACGATCTGT CTCCACAAGA GACAAGCTCT TCTAGGCTAA CCGAGACAAG CCTTTCCCGC AAAGATGGCG TTACGACGAG GAATATGCTG GAAAAGGTCT CCGGGACGTC TAATCATCAC CAACGCGGAC CAACGGAGCG GATGACCGAG ATCACTCTCA GTGAGCTGTC CAATTACTTC AATATGCCGA TCACACAAGC TTCTAAGGAG CTCAAGGTTG GTCTGACGGT TCTGAAGAAA AGATGCCGGG AGTTCGGAAT ACCACGTTGG CCACATCGGA AAATGAAGAG TCTTGACAGT CTTATCCACA ACATTCAGGA GCTAGCAAAA GGACCTGAGG GTAAGACTTC TGCACCAGTC ATGAATGCAG TCAAGGAGCT AGAGCATCAG AAGAAGAGAA TGGAGGAGAG GCCTGGAATT GAGCTTGCGG AGCGCACTAA GAGGCTCCGT CAAGCTTGTT TCAAGGCTAG TTACAAGAAA CGCCGACAGG CTCAAACTCT AGCTCAGCAG GAGTCATATG AGGTTTCAGG GGCAGTTCCT GTAGACCAAT GTGTCTCAAC CCTGGTCTCA TGACATAGGG GCTCCCTTCC GTCCAAAGTT TCAAATCAAA TAGAAGCAGG GTTTAACCAT GCAGGTATTT ACTTAGAAGA TGCTACTTGA TATCATAACC TTCCGTTTGC TCCCCCAGAC GTCGTCTCGG GGTAGACTCA CAAGGAGGTA GACATTCGTA GCTGTTGTCT TAGTCGACTA CTTGGTGGTG TGGCATCCAG GACCAGCATT TAGATGCGAG ACCCTGCACA CATATTTTGA GTGTTTTGCT TGGTGTGTTC CGTGTACCAT AGGACACTCA AGAGGGTTGC CTTGAACTAG ATAAGCCAAA AGACCAAGAT GTGATTTGTG GATGTTGTCA ATCACATCTT GCTCCAGTGC ATGTCTTGTG GCACTGCGTA GTATTTAGCT AGCTTTATAT TGCATTAGTT GGAAATTGGA CAAGGTACGG TGGGCGGGTC TGTTGTACCC GCCTTGTTAG CCGTTGCACA GAGTATAGAA CTCTTTCCAA AGTTTTTTGT TCCAACCGAA CACGACCTAT TCTATGTTTA AAATACAAGT AATAGTTCAA CTGTGTTGTT TGTAATTTTA CATCGGCGTT ATAAAACTTT |
CDS |
| >Mp3g04030.1 ATGGGAAGCA CCGGCCTGCG CGCCTCTACA TTCCCCGCCG CCTCCTCCTC TTCCCGCTCG CTGCGCGCTA TTGCTATTTT CCAGCATCTT CAAAACTTAG AGATCTTCAA AAGTGTTCAC CTGTACACGG AAAATGGTTC CGTCACAGCA GTCCAGCAAG AATTCCTGCT CTCTCCGGGC TCGTACTCTC AAATTAGTGA CCCACTACCA TTCTACTTCA GTACGCCTAC GGGTGTCGAA CAGTTCATGG GCACCCTCAA GCGCCTGACT GAGTTCGAGC TTTGGCAATG CATATTGGAA TATAGTAGTA ATGCACCTCT TGCTACTACT GTCGTCCCGT TTCTGAGTGT CACGAGGAAT CCGCAATTGA GAACCTTGCC GACTCTGGCG AATGACCTGA TTTTGGTTGA GAAGGCGATC GAAAGAGAGA AATTGTTGCA ATGTCCACCT CTGAGACATC CGCCTTCACC TAGACAAGAG CAGGAACACT TGCCGGTGGG AACTCGAGGC TCACCTGAAG ACACGAGATC TTGGAACCCG ATCAAGTGGC TACCTAGCAC GTCCGCCATG TCTGCTTCTA CCGGTCAGTC TGCCGAATCT AACGATACTC GCGAAGACGG GTTGGGTGAT GGATCCAACC TGCAGTTGGA AACCCTGCAC GAGTGGGGAT CTGATTTAGA ACTTGCCAGT CCGCGCATGT TTGATACTTG TCTGGGCTCT TCTTGGAGTA CAAGCATTTC GAGCGTCCCG TTCACAGCTC TGATGTCTGC ACCGAGCCCG ACTTCGAGCT TAATGACGAA TCACAAAACT GCTTGCTCTT CTTGGAGCTC TCCAAATCTT GGACTGAATT CTCTTAGTGG TACTTTCGAT TATCACCTGG ACTCTTCGTC CAGCCAGAGC AACTTCGGTC ATGGAAGGCT CGCCTTAACC TATGACTTGC CGAGCCCTGG AGGGAATTTG AGCTCCTGTC ACTCAGAATC CGTCCCTATG AGCATGAATG GTGGGTTGGC GTACAAGGCG CGGAACTCTG CTCCTTTGAG GAAGGCAGTA GAGCGAACTC GGTCTCACTG CAGTGATGAG AGTGTGTGCA CGCCTCCCAT ACTGAATGAG AGGCAGGGGT CTGGATATTC TCTTCACTCC CACTCCCTGC CTCCTCAGGC GACAAAGTTG AGGCTCTCAG ATTGTAGCCA CGATCTGTCT CCACAAGAGA CAAGCTCTTC TAGGCTAACC GAGACAAGCC TTTCCCGCAA AGATGGCGTT ACGACGAGGA ATATGCTGGA AAAGGTCTCC GGGACGTCTA ATCATCACCA ACGCGGACCA ACGGAGCGGA TGACCGAGAT CACTCTCAGT GAGCTGTCCA ATTACTTCAA TATGCCGATC ACACAAGCTT CTAAGGAGCT CAAGGTTGGT CTGACGGTTC TGAAGAAAAG ATGCCGGGAG TTCGGAATAC CACGTTGGCC ACATCGGAAA ATGAAGAGTC TTGACAGTCT TATCCACAAC ATTCAGGAGC TAGCAAAAGG ACCTGAGGGT AAGACTTCTG CACCAGTCAT GAATGCAGTC AAGGAGCTAG AGCATCAGAA GAAGAGAATG GAGGAGAGGC CTGGAATTGA GCTTGCGGAG CGCACTAAGA GGCTCCGTCA AGCTTGTTTC AAGGCTAGTT ACAAGAAACG CCGACAGGCT CAAACTCTAG CTCAGCAGGA GTCATATGAG GTTTCAGGGG CAGTTCCTGT AGACCAATGT GTCTCAACCC TGGTCTCATG A |
Protein |
| >Mp3g04030.1 MGSTGLRAST FPAASSSSRS LRAIAIFQHL QNLEIFKSVH LYTENGSVTA VQQEFLLSPG SYSQISDPLP FYFSTPTGVE QFMGTLKRLT EFELWQCILE YSSNAPLATT VVPFLSVTRN PQLRTLPTLA NDLILVEKAI EREKLLQCPP LRHPPSPRQE QEHLPVGTRG SPEDTRSWNP IKWLPSTSAM SASTGQSAES NDTREDGLGD GSNLQLETLH EWGSDLELAS PRMFDTCLGS SWSTSISSVP FTALMSAPSP TSSLMTNHKT ACSSWSSPNL GLNSLSGTFD YHLDSSSSQS NFGHGRLALT YDLPSPGGNL SSCHSESVPM SMNGGLAYKA RNSAPLRKAV ERTRSHCSDE SVCTPPILNE RQGSGYSLHS HSLPPQATKL RLSDCSHDLS PQETSSSRLT ETSLSRKDGV TTRNMLEKVS GTSNHHQRGP TERMTEITLS ELSNYFNMPI TQASKELKVG LTVLKKRCRE FGIPRWPHRK MKSLDSLIHN IQELAKGPEG KTSAPVMNAV KELEHQKKRM EERPGIELAE RTKRLRQACF KASYKKRRQA QTLAQQESYE VSGAVPVDQC VSTLVS |