Mp1g08940



Description

Annotation

Database ID Description
FunFam G3DSA:3.40.50.300:FF:000687 Ras-related protein RABF2b
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
SMART SM00175 rab_sub_5
SMART SM00174 rho_sub_3
SMART SM00173 ras_sub_4
SMART SM00176 ran_sub_2
Pfam PF00071 Ras family
ProSiteProfiles PS51419 small GTPase Rab1 family profile.
CDD cd01860 Rab5_related
ProSiteProfiles PS51421 small GTPase Ras family profile.
Gene3D G3DSA:3.40.50.300 -
ProSiteProfiles PS51420 small GTPase Rho family profile.
PRINTS PR00449 Transforming protein P21 ras signature
NCBIfam TIGR00231 small GTP-binding protein domain
PANTHER PTHR47978 -
KEGG K07889 Ras-related protein Rab-5C
KOG KOG0092 GTPase Rab5/YPT51 and related small G protein superfamily GTPases; [U]
MapolyID Mapoly0036s0134 -
GO GO:0003924 GTPase activity
GO GO:0005794 Golgi apparatus
GO GO:0005525 GTP binding
GO GO:0005768 endosome

Nomenclature

Gene symbol Product Transcript ID Status
MpRAB5 RAB GTPase Published

Associated Literature (AI-based literature mining, Beta-version)

RAB GTPase; genome paper: Mapoly0036s0134.1 (from nomenclature)

0 core 6 peripheral

Bowman, J. L., et al. (2022) · Plant Cell  review citation comparator
Marchantia gene cited in Bowman et al. (2022) model-system review
Minamino, N., et al. (2018) · Plant and Cell Physiology  research sequence comparator
Canonical RAB5; family inventory.
Kanazawa, T., et al. (2022) · Frontiers in Plant Science  research experimental tool
Multivesicular body marker (mCitrine-MpRAB5); no clear colocalization with MpSEC28, excluding MVB localization.
Westermann, J., et al. (2020) · Frontiers in Plant Science  research experimental tool
Endosomal marker shown in punctate structures, co-localizing with MpARA6 to validate dual-marker imaging.
Koebke, E., et al. (2022) · Frontiers in Plant Science  research experimental tool
Endosomal marker used to test localization specificity; showed only partial overlap with MpSPI.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g08940.1 chr1:9478181..9483126 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.