Csicsely, E., et al. · 2025 · The Plant Journal research
doi:10.1111/tpj.17236 PMID:39910986 PMC11799827
| Gene ID | Name | Evidence / Role | Function (this paper) |
|---|---|---|---|
| Mp7g12090 | MpDCL1a paper
MpDCL1b nomenclature |
experimental subject | DICER-LIKE (full domains+DSRM); Mpdcl1a mutant pleiotropic (slow growth, no branching, no gemma-cup walls), most DE miRNAs, salt-tolerant, ABA/NAA hypersensitive; main miRNA-biogenesis DCL. |
| Mp6g09830 | MpDCL1b paper
MpDCL3 nomenclature |
experimental subject | Atypical DCL (PAZ+dual RNaseIII only, moss/fern-specific); mutant near-WT but deformed gametangiophores and strongly enhanced salt tolerance; salt sensitivity depends on MpDCL1b. |
| Mp1g02840 | MpDCL3 paper
MpDCL1a nomenclature |
experimental subject | Full-domain DCL; mutant stunted/more-branched, no inducible gametangiophores, salt/ABA hypersensitive; linked to 24-nt siRNA biogenesis & MpPR-1 regulation. |
| Mp7g11720 | MpDCL4 | experimental subject | Full-domain DCL; mutant lacks inducible gametangiophores, salt/ABA hypersensitive, loses MpTAS3 ta-siRNAs; ta-siRNA biogenesis role. |
| Mp7g16380 | missing | sequence comparator | Candidate DCL homolog of a possible new class; excluded (lacks PAZ domain). |
| Mp2g02920 | MpABCB1 | experimental background | Auxin transporter (Mp2g02920); DE in Mpdcl1a. |
| — | MpAP2 missing | citation background | Cited mRNA target of MpTAS3-derived ta-siRNAs. |
| Mp1g07070 | MpARF3 | citation background | Cited miR160 target regulating MpC2HDZ. |
| Mp2g04200 | MpBHLH37 | experimental background | bHLH TF (Mp2g04200); up miRNA target. |
| Mp2g24200 | MpC2HDZ | experimental background | Class II HD-Zip (Mp2g24200); down, putative miRNA target. |
| Mp5g07320 | MpCAT4 | experimental background | Catalase4 (Mp5g07320); qRT-PCR validation target. |
| Mp4g01900 | MpCDC25_1 | experimental background | MpCDC25_1 phosphatase; up in Mpdcl1b. |
| Mp5g03090 | MpCKX1 | experimental background | Cytokinin oxidase1 (Mp5g03090); down in Mpdcl1a, up in Mpdcl3/4. |
| Mp8g15840 | MpCTR1 | experimental background | CTR1 ethylene kinase (Mp8g15840); down in Mpdcl1a. |
| Mp2g25500 | MpCYCA | experimental background | Cyclin (Mp2g25500); up in Mpdcl1b. |
| Mp5g10030 | MpCYCB_1 | experimental background | MpCYCB1 cyclin; up in Mpdcl1b, salt-repressed. |
| Mp7g09350 | MpERF15 | experimental background | AP2/ERF TF (Mp7g09350); down, putative miRNA target. |
| Mp5g12480 | MpERF18 | experimental background | AP2/ERF TF (Mp5g12480); up in Mpdcl4. |
| Mp6g04880 | MpERF7 | experimental background | AP2/ERF TF (Mp6g04880); down, qRT-PCR validated. |
| Mp1g17210 | MpFGMYB | experimental background | Female-gametophyte MYB (Mp1g17210); up, miRNA-anticorrelated. |
| Mp4g08700 | MpGARP2 | experimental background | GARP2 (Mp4g08700); down, miRNA target (validated). |
| Mp2g14010 | MpGH3B | experimental background | GH3B auxin gene (Mp2g14010); DE in Mpdcl1a. |
| Mp7g11980 | MpIAMT1 | experimental background | IAA methyltransferase (Mp7g11980); DE in Mpdcl1a. |
| Mp4g05730 | MpLEA-like18 | experimental background | LEA (Mp4g05730); miR1030-regulated, up in Mpdcl1a. |
| Mp6g02670 | MpNAC8 | experimental background | NAC TF (Mp6g02670); up (validated). |
| Mp3g25440 | MpPR10.2 | experimental background | Unknown-function gene; qRT-PCR validation. |
| Mp3g23170 | MpR2R3-MYB8 | experimental background | R2R3-MYB8 (Mp3g23170); miRNA-anticorrelated target. |
| Mp1g04830 | MpRGI-like | experimental background | LRR kinase (Mp1g04830); putative miR390 target. |
| Mp1g27980 | MpSAUR8 | experimental background | SAUR8 auxin gene (Mp1g27980); DE in Mpdcl1a. |
| Mp3g19510 | MpSHI | experimental background | Auxin-related (Mp3g19510); DE in Mpdcl1a. |
| Mp8g10660 | MpSKP2A | experimental background | Auxin-related (Mp8g10660); DE in Mpdcl1a. |
| Mp8g11870 | MpSTG | experimental background | MpR2R3-MYB5; down in Mpdcl3/4. |
| Mp5g14320 | MpTAA | experimental background | TRYPTOPHAN AMINOTRANSFERASE (Mp5g14320); 2.8x up in Mpdcl1a (DEG). |
| — | MpTAS3 missing | experimental background | TAS3 locus (scaffold_154); miR390-derived ta-siRNAs targeting MpAP2, reduced in Mpdcl4. |