Mp2g14140



Description

Annotation

Database ID Description
FunFam G3DSA:1.20.58.70:FF:000010 Syntaxin-43
Pfam PF05739 SNARE domain
SMART SM00503 SynN_4
CDD cd15845 SNARE_syntaxin16
ProSitePatterns PS00914 Syntaxin / epimorphin family signature.
Gene3D G3DSA:1.20.58.70 -
SMART SM00397 tSNARE_6
PANTHER PTHR19957 SYNTAXIN
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF47661 t-snare proteins
ProSiteProfiles PS50192 t-SNARE coiled-coil homology domain profile.
KEGG K08489 syntaxin 16
KOG KOG0809 SNARE protein TLG2/Syntaxin 16; [U]
MapolyID Mapoly0042s0041 -
GO GO:0000149 SNARE binding
GO GO:0016192 vesicle-mediated transport
GO GO:0006906 vesicle fusion
GO GO:0012505 endomembrane system
GO GO:0031201 SNARE complex
GO GO:0006886 intracellular protein transport
GO GO:0048278 vesicle docking
GO GO:0016021 membrane
GO GO:0016020 membrane
GO GO:0005484 SNAP receptor activity

Nomenclature

Gene symbol Product Transcript ID Status
MpSYP4 Ortholog of Arabidopsis SYP4 genes Published

Associated Literature (AI-based literature mining, Beta-version)

Ortholog of Arabidopsis SYP4 genes; The transcript is detected in thalli, antheridiophores, archegoniophores, and sporelings. Citrine-tagged MpSYP4 driven by the cauliflower mosaic virus 35S promoter is localized to the trans-Golgi network. (from nomenclature)

0 core 4 peripheral

Bowman, J. L., et al. (2022) · Plant Cell  review citation comparator
Marchantia gene cited in Bowman et al. (2022) model-system review
Wachananawat, B., et al. (2020) · Frontiers in Plant Science  research experimental tool
Trans-Golgi network marker (pro35S:MpSYP4-Citrine) co-transformed with MpRRT1-tagRFP as a localization reference; not characterized itself.
Kanazawa, T., et al. (2022) · Frontiers in Plant Science  research experimental tool
Trans-Golgi network marker (mCitrine-MpSYP4); low Pearson colocalization with MpSEC28-mCherry indicated MpSEC28 is not at the TGN.
Kanazawa, T., et al. (2020) · Nature Communications  research experimental tool
TGN SNARE marker; compartment control.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp2g14140.1 chr2:15792997..15798551 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp2g14140.2 chr2:15792997..15798551 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.