Mp5g12920



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF01789 PsbP
NCBIfam NF040946 photosystem II reaction center PsbP
Pfam PF20928 PsbP, C-terminal
Gene3D G3DSA:3.40.1000.10 Mog1/PsbP, alpha/beta/alpha sandwich
PANTHER PTHR31407 PSBP-LIKE PROTEIN 1, CHLOROPLASTIC
SUPERFAMILY SSF55724 Mog1p/PsbP-like
KEGG K02717 photosystem II oxygen-evolving enhancer protein 2
KOG KOG2744 DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain; N-term missing; C-term missing; [K]
MapolyID Mapoly0092s0016 -
GO GO:0005509 calcium ion binding
GO GO:0015979 photosynthesis
GO GO:0019898 extrinsic component of membrane
GO GO:0009523 photosystem II
GO GO:0009654 photosystem II oxygen evolving complex

Nomenclature

No gene symbols are registered for this gene.

Associated Literature (AI-based literature mining, Beta-version)

Host gene overlapping MpmiR11737a, encoding a chloroplast PsbP protein; MpmiR11737a transcription initiates within its intron, identified through genomic analysis.

1 core 0 peripheral

Aggarwal, B., et al. (2024) · RNA Biology  research experimental subject
Host gene overlapping MpmiR11737a, encoding a chloroplast PsbP protein; MpmiR11737a transcription initiates within its intron, identified through genomic analysis.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp5g12920.1 chr5:16946970..16957148 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g12920.2 chr5:16946970..16948799 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.