Mp8g00450



Description

Annotation

Database ID Description
ProSiteProfiles PS51419 small GTPase Rab1 family profile.
FunFam G3DSA:3.40.50.300:FF:000851 Ras-related small GTP-binding family protein
CDD cd01860 Rab5_related
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
SMART SM00175 rab_sub_5
Gene3D G3DSA:3.40.50.300 -
NCBIfam TIGR00231 small GTP-binding protein domain
PANTHER PTHR47978 -
ProSiteProfiles PS51421 small GTPase Ras family profile.
SMART SM00174 rho_sub_3
Pfam PF00071 Ras family
PRINTS PR00449 Transforming protein P21 ras signature
SMART SM00173 ras_sub_4
KEGG K07889 Ras-related protein Rab-5C
KOG KOG0092 GTPase Rab5/YPT51 and related small G protein superfamily GTPases; [U]
MapolyID Mapoly0077s0027 -
GO GO:0003924 GTPase activity
GO GO:0005794 Golgi apparatus
GO GO:0005525 GTP binding
GO GO:0005768 endosome

Nomenclature

Gene symbol Product Transcript ID Status
MpARA6 RAB GTPase Published

Associated Literature (AI-based literature mining, Beta-version)

RAB GTPase; genome paper: Mapoly0077s0027.1 (from nomenclature)

0 core 3 peripheral

Minamino, N., et al. (2018) · Plant and Cell Physiology  research sequence comparator
Plant-unique RAB5 (ARA6); family inventory.
Koebke, E., et al. (2022) · Frontiers in Plant Science  research experimental tool
Endosomal marker (RABF1) used to test specificity; partial overlap with MpSPI supported direct MpLIP5/MpSKD1 interaction.
Westermann, J., et al. (2020) · Frontiers in Plant Science  research experimental tool
Endosomal compartment marker visualized in punctate structures and co-localized with MpRAB5 as a validation pair.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp8g00450.1 chr8:615910..620645 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.