Mp3g07970



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
CDD cd01647 RT_LTR
Pfam PF03732 Retrotransposon gag protein
Coils Coil Coil
CDD cd00303 retropepsin_like
Pfam PF17921 Integrase zinc binding domain
Gene3D G3DSA:3.10.10.10 HIV Type 1 Reverse Transcriptase, subunit A, domain 1
ProSiteProfiles PS50994 Integrase catalytic domain profile.
SUPERFAMILY SSF53098 Ribonuclease H-like
SUPERFAMILY SSF50630 Acid proteases
PANTHER PTHR37984 PROTEIN CBG26694
FunFam G3DSA:3.30.420.10:FF:000032 Retrovirus-related Pol polyprotein from transposon 297-like Protein
SUPERFAMILY SSF56672 DNA/RNA polymerases
Gene3D G3DSA:3.30.420.10 -
Pfam PF00665 Integrase core domain
Pfam PF17919 RNase H-like domain found in reverse transcriptase
Gene3D G3DSA:1.10.340.70 -
Gene3D G3DSA:3.30.70.270 -
FunFam G3DSA:3.30.70.270:FF:000020 Transposon Tf2-6 polyprotein-like Protein
CDD cd09274 RNase_HI_RT_Ty3
Gene3D G3DSA:2.40.70.10 Acid Proteases
Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase)
KOG KOG4274 Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II; N-term missing; C-term missing; [K]
MapolyID Mapoly0184s0001 -
GO GO:0003676 nucleic acid binding
GO GO:0015074 DNA integration

Nomenclature

No gene symbols are registered for this gene.

Associated Literature (AI-based literature mining, Beta-version)

Peroxidase; DEG.

0 core 1 peripheral

Jibran, R., et al. (2024b) · Frontiers in Plant Science  research experimental background
Peroxidase; DEG.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp3g07970.1 chr3:8155363..8162765 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.