Mp3g02240



Description

Annotation

Database ID Description
SUPERFAMILY SSF88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
Gene3D G3DSA:1.10.10.10 -
MobiDBLite mobidb-lite consensus disorder prediction
PRINTS PR00046 Major sigma-70 factor signature
Pfam PF04542 Sigma-70 region 2
PANTHER PTHR30603 RNA POLYMERASE SIGMA FACTOR RPO
Pfam PF04539 Sigma-70 region 3
SUPERFAMILY SSF88946 Sigma2 domain of RNA polymerase sigma factors
NCBIfam TIGR02937 sigma-70 family RNA polymerase sigma factor
Pfam PF04545 Sigma-70, region 4
Gene3D G3DSA:1.10.601.10 RNA Polymerase Primary Sigma Factor
MapolyID Mapoly0007s0213 -
GO GO:0006352 DNA-templated transcription initiation
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0006355 regulation of DNA-templated transcription

Nomenclature

Gene symbol Product Transcript ID Status
MpSIG5 Ortholog of Arabidopsis SIG5 gene Published

Associated Literature (AI-based literature mining, Beta-version)

Ortholog of Arabidopsis SIG5 gene; Citrine fused with the amino terminal sequence of MpSIG5 is transferred to chloroplasts. MpSIG5 transcript is decreased by dark shift, and transiently induced by light illumination, especially blue-light irradiation. Various environmental stresses such as high light, low temperature, high osmolarity, high saline, and ROS, transiently induce MpSIG5 transcript. SIG5 genes are conserved among embryophyte and a part of charophytes including Klebsormidium flaccidum. (from nomenclature)

0 core 3 peripheral

Marchetti, F., et al. (2021) · Plant Cell and Environment  research citation background
Review: plastid sigma factor in the heat-stress response.
Clayton, W. A., et al. (2018) · Plant Journal  research experimental background
UVB-induced DEG, RNA polymerase sigma factor RPO (annotation).
Roetzer J, Asper B, Meir Z, Edelbacher N, Merai Z, Datta S, Dolan L. (2026) · Current biology : CB  research experimental background
Sigma factor 5; light-responsive gene induced in the assays.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp3g02240.1 chr3:2320726..2324713 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.