Mp4g21220



Description

Annotation

Database ID Description
ProSiteProfiles PS51294 Myb-type HTH DNA-binding domain profile.
PANTHER PTHR31442 HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED
FunFam G3DSA:1.10.10.60:FF:000007 Two-component response regulator
Gene3D G3DSA:1.10.10.60 -
Pfam PF00249 Myb-like DNA-binding domain
SUPERFAMILY SSF46689 Homeodomain-like
MobiDBLite mobidb-lite consensus disorder prediction
NCBIfam TIGR01557 myb-like DNA-binding domain, SHAQKYF class
MapolyID Mapoly0101s0068 -
GO GO:0006355 regulation of DNA-templated transcription
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0005634 nucleus
GO GO:0003677 DNA binding

Nomenclature

Gene symbol Product Transcript ID Status
MpGARP7 transcription factor, GARP Published
MpLUX LUX Published

Associated Literature (AI-based literature mining, Beta-version)

Core evening-complex gene and central subject of the paper. Loss-of-function mutants show increased thallus surface area with a ~40% decrease in chlorenchyma cells, while overexpression yields small, compact, dark-green thalli with inhibited cell elongation. Expressed in photosynthetic filaments and developing tissues, and forms an EC with MpEFL and MpELF3.

3 core 1 peripheral

Lagercrantz, U., et al. (2022) · PLoS ONE  research experimental subject
Core evening-complex gene and central subject of the paper. Loss-of-function mutants show increased thallus surface area with a ~40% decrease in chlorenchyma cells, while overexpression yields small, compact, dark-green thalli with inhibited cell elongation. Expressed in photosynthetic filaments and developing tissues, and forms an EC with MpEFL and MpELF3.
Lagerkrantz, U., et al. (2020) · Scientific Reports  research experimental subject
Two independent mutant alleles (Mpluxge-9, Mpluxge-19) show arrhythmic phenotypes with dampened rhythm and elevated MpPRR; free IAA oscillations are lost in the mutant.
Linde, A.-M., et al. (2017) · New Phytologist  research experimental subject
Single LUX ARRHYTHMO homologue with evening-phased circadian expression; promoter:LUC shows bioluminescence rhythms under day/night and constant light, expressed in meristematic regions.
Lagercrantz, U., et al. (2021) · New Phytologist  research experimental background
LUX; evening-complex clock gene (output/component).

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp4g21220.1 chr4:28429002..28433954 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp4g21220.2 chr4:28431022..28434107 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.