Mp2g17590



Description

Annotation

Database ID Description
Gene3D G3DSA:1.25.40.80 -
NCBIfam TIGR02766 cryptochrome photoreceptor
FunFam G3DSA:1.10.579.10:FF:000003 Deoxyribodipyrimidine photo-lyase
Gene3D G3DSA:1.10.579.10 DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3
Pfam PF00875 DNA photolyase
SUPERFAMILY SSF52425 Cryptochrome/photolyase, N-terminal domain
PRINTS PR00147 DNA photolyase signature
MobiDBLite mobidb-lite consensus disorder prediction
ProSiteProfiles PS51645 Photolyase/cryptochrome alpha/beta domain profile.
SUPERFAMILY SSF48173 Cryptochrome/photolyase FAD-binding domain
PANTHER PTHR11455 CRYPTOCHROME
Gene3D G3DSA:3.40.50.620 HUPs
Pfam PF03441 FAD binding domain of DNA photolyase
ProSitePatterns PS00394 DNA photolyases class 1 signature 1.
KEGG K01669 deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
KOG KOG0133 Deoxyribodipyrimidine photolyase/cryptochrome; [LT]
MapolyID Mapoly0094s0027 -
GO GO:0005634 nucleus
GO GO:0009882 blue light photoreceptor activity
GO GO:0003904 deoxyribodipyrimidine photo-lyase activity
GO GO:0032922 circadian regulation of gene expression
GO GO:0009785 blue light signaling pathway
GO GO:0071949 FAD binding
GO GO:0003677 DNA binding
GO GO:0005737 cytoplasm
GO GO:0043153 entrainment of circadian clock by photoperiod

Nomenclature

Gene symbol Product Transcript ID Status
MpCRY blue-light receptor CRYPTOCHROME Published

Associated Literature (AI-based literature mining, Beta-version)

Main subject of the study. CRISPR/Cas9 knockout (Mpcry) was generated and analyzed; mutants showed asymmetric thallus growth under blue light. The gene has six exons/five introns encoding a 715-aa protein, and a Citrine-tagged MpCRY localized to nucleus and cytoplasm.

3 core 0 peripheral

Liao, J., et al. (2023) · New Phytologist  research experimental subject
Cryptochrome blue-light photoreceptor (Mp2g17590); modulates ABA signaling to regulate dormancy. OE/mutant lines alter ABA-responsive dormancy gene expression.
Zhang, L., et al. (2022b) · International Journal of Molecular Sciences  research experimental subject
Central blue-light receptor of the study; knockout lines Mpcry-7 and Mpcry-8 were generated by CRISPR/Cas9. MpCRY is degraded and phosphorylated under blue light like Arabidopsis CRY2, and constitutively interacts with MpSPA in yeast.
Li, T., et al. (2021b) · Cells  research experimental subject
Main subject of the study. CRISPR/Cas9 knockout (Mpcry) was generated and analyzed; mutants showed asymmetric thallus growth under blue light. The gene has six exons/five introns encoding a 715-aa protein, and a Citrine-tagged MpCRY localized to nucleus and cytoplasm.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp2g17590.1 chr2:20491806..20497964 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp2g17590.2 chr2:20491803..20497964 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.