Mp1g19590



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR31072 TRANSCRIPTION FACTOR TCP4-RELATED
ProSiteProfiles PS51370 R domain profile.
Pfam PF03634 TCP family transcription factor
ProSiteProfiles PS51369 TCP domain profile.
KOG KOG0307 Vesicle coat complex COPII, subunit SEC31; N-term missing; [U]
MapolyID Mapoly0001s0298 -
GO GO:0043565 sequence-specific DNA binding
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0005634 nucleus

Nomenclature

Gene symbol Product Transcript ID Status
MpTCP2 bHLH transcription factor Published

Associated Literature (AI-based literature mining, Beta-version)

bHLH transcription factor; Genome paper TCP2: Mapoly0001s0298.1 (from nomenclature)

0 core 3 peripheral

Karaaslan, E. S. h., et al. (2020) · Nature Plants  research experimental comparator
TCP-C TCP gene (Mp1g19590); not upregulated in tcp1 (no compensation).
Busch, A., et al. (2019) · New Phytologist  research sequence comparator
TCP-C class TCP gene (single copy); phylogenetic comparison.
Flores-Sandoval, E., et al. (2018b) · Frontiers in Plant Science  research experimental background
Class II TCP TF listed in DEG/co-expression tables (logFC 11.89, logCPM 5.02).

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g19590.1 chr1:20553351..20559202 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g19590.2 chr1:20553436..20559220 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.