Mp1g13160



Description

Annotation

Database ID Description
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile.
PANTHER PTHR46598 BNAC05G43320D PROTEIN
NCBIfam TIGR00756 pentatricopeptide repeat
Pfam PF13041 PPR repeat family
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain
Pfam PF13812 Pentatricopeptide repeat domain
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF01535 PPR repeat
Pfam PF12854 PPR repeat
KOG KOG4422 Uncharacterized conserved protein; N-term missing; C-term missing; [S]
MapolyID Mapoly0019s0086 -
GO GO:0005515 protein binding

Nomenclature

Gene symbol Product Transcript ID Status
MpPPR_16 Pentatricopeptide repeat proteins Published

Associated Literature (AI-based literature mining, Beta-version)

Pentatricopeptide repeat proteins; Genome paper MpPPR_16: Mapoly0019s0086.1 (from nomenclature)

0 core 1 peripheral

Clayton, W. A., et al. (2018) · Plant Journal  research experimental background
UVB-induced DEG, chloroplastic polycistronic transcript processing (annotation).

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g13160.1 chr1:13528776..13533252 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g13160.2 chr1:13528747..13533413 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.