Mp6g18570



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF12624 VPS13-like, N-terminal
Pfam PF13329 Autophagy-related protein 2, middle RBG modules
PANTHER PTHR13190 AUTOPHAGY-RELATED 2, ISOFORM A
Coils Coil Coil
Pfam PF09333 ATG2/VPS13, C terminal domain
KEGG K17906 autophagy-related protein 2
KOG KOG2993 Cytoplasm to vacuole targeting protein; N-term missing; [U]
KOG KOG1809 Vacuolar protein sorting-associated protein; C-term missing; [U]
MapolyID Mapoly0038s0067 -
GO GO:0032266 phosphatidylinositol-3-phosphate binding
GO GO:0000045 autophagosome assembly
GO GO:0061709 reticulophagy
GO GO:0044805 obsolete late nucleophagy
GO GO:0006914 autophagy
GO GO:0034727 piecemeal microautophagy of the nucleus
GO GO:0000422 autophagy of mitochondrion
GO GO:0000407 phagophore assembly site

Nomenclature

Gene symbol Product Transcript ID Status
MpATG2 Autophagy protein Provisional

Associated Literature (AI-based literature mining, Beta-version)

A core autophagy gene knocked out by CRISPR/Cas9 (Mpatg2-1ge frameshift). The mutant blocks vacuolar transport of fluorescent MpATG8, showing MpATG2 is required for autophagosome-mediated delivery and autophagy-dependent chlorophyll maintenance under nutrient stress.

1 core 1 peripheral

Norizuki, T., et al. (2019) · Frontiers in Plant Science  research experimental subject
A core autophagy gene knocked out by CRISPR/Cas9 (Mpatg2-1ge frameshift). The mutant blocks vacuolar transport of fluorescent MpATG8, showing MpATG2 is required for autophagosome-mediated delivery and autophagy-dependent chlorophyll maintenance under nutrient stress.
Goto-Yamada, S., et al. (2022) · Frontiers in Cell and Developmental Biology  review citation background
M. polymorpha ATG2 (peroxin/peroxisome biogenesis)

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp6g18570.1 chr6:24750931..24765082 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp6g18570.2 chr6:24750931..24765082 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp6g18570.3 chr6:24751035..24765082 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp6g18570.4 chr6:24751035..24765082 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.