Kawamura, S., et al. · 2022 · Plant & Cell Physiology research
doi:10.1093/pcp/pcac129 PMID:36083565 PMC9680858
| Gene ID | Name | Evidence / Role | Function (this paper) |
|---|---|---|---|
| Mp3g02320 | MpC1HDZ | citation subject | Transcription factor identified (in cited work) as a positive regulator of oil body cell differentiation; loss-of-function mutants lack oil body cells. Its RNA-seq mutant data were reanalyzed to demonstrate the tool's DEG/volcano-plot features. |
| Mp6g08690 | MpERF13 | citation subject | Transcription factor positive regulator of oil body cell differentiation; gain-of-function alleles increase oil body cell number (cited). Used as a case study to demonstrate co-expression and DEG analyses in the tool. |
| Mp8g13070 | MpABCG1 | citation tool | Protein known (from cited work) to be specifically expressed in oil body cells; used as a bait gene in the co-expression network analysis demonstrating the tool. |
| Mp2g16090 | MpPHY | sequence tool | Cited as an example gene identifier (MpGene ID) format that users can query in the MarpolBase Expression tools. |
| Mp4g20670 | MpSYP12B | citation tool | Protein known to be specifically expressed in oil body cells; used as a bait in the Functional Network analysis demonstration, found closely associated with MpMYB02. |
| — | MpCPT missing | citation background | Cis-prenyltransferase in the limonene biosynthesis pathway; recovered as co-expressed with oil body marker genes in the demonstration analysis. |
| Mp6g04320 | MpFTPSL2 | citation background | Fungal-type TPS-like enzyme in sesquiterpene biosynthesis; its promoter is reported (cited) as oil-body-specific. Appears among co-expressed oil body genes in the demonstration. |
| Mp6g04400 | MpFTPSL3 | citation background | Fungal-type TPS-like enzyme involved in sesquiterpene biosynthesis; appears among genes co-expressed with oil body markers in the demonstration analysis. |
| Mp3g18500 | MpMTPSL2 | citation background | Microbial-type TPS-like enzyme in the limonene biosynthesis pathway; recovered as highly co-expressed with oil body marker genes in the demonstration analysis. |
| Mp3g07510 | MpMYB02 | citation background | R2R3-MYB transcription factor reported (cited) in bisbibenzyl biosynthesis and oil body cells; surfaced via Functional Network analysis as closely associated with MpSYP12B in the demonstration. |
| Mp2g07200 | MpTPS3 | citation background | Plant-type terpene synthase that co-expressed with oil body markers in the demonstration, suggesting possible involvement in oil-body compound biosynthesis. |
| Mp2g24630 | MpTPS7 | citation background | Plant-type terpene synthase that co-expressed with oil body markers in the demonstration, suggesting possible involvement in oil-body compound biosynthesis. |