Mp4g20670



Description

Annotation

Database ID Description
FunFam G3DSA:1.20.58.70:FF:000003 Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group
Pfam PF05739 SNARE domain
PANTHER PTHR19957 SYNTAXIN
CDD cd00179 SynN
SUPERFAMILY SSF47661 t-snare proteins
SMART SM00503 SynN_4
Pfam PF00804 Syntaxin
Gene3D G3DSA:1.20.58.70 -
CDD cd15848 SNARE_syntaxin1-like
ProSiteProfiles PS50192 t-SNARE coiled-coil homology domain profile.
FunFam G3DSA:1.20.5.110:FF:000008 Syntaxin 132
Gene3D G3DSA:1.20.5.110 -
Coils Coil Coil
SMART SM00397 tSNARE_6
KOG KOG0810 SNARE protein Syntaxin 1 and related proteins; [U]
MapolyID Mapoly0101s0013 -
GO GO:0000149 SNARE binding
GO GO:0016192 vesicle-mediated transport
GO GO:0006906 vesicle fusion
GO GO:0012505 endomembrane system
GO GO:0031201 SNARE complex
GO GO:0006886 intracellular protein transport
GO GO:0005886 plasma membrane
GO GO:0048278 vesicle docking
GO GO:0016021 membrane
GO GO:0006887 exocytosis
GO GO:0016020 membrane
GO GO:0005484 SNAP receptor activity

Nomenclature

Gene symbol Product Transcript ID Status
MpSYP12B Common ortholog of both Arabidopsis SYP11 and SYP12 genes Published

Associated Literature (AI-based literature mining, Beta-version)

Common ortholog of both Arabidopsis SYP11 and SYP12 genes; The transcript is detected in thalli, antheridiophores, and archegoniophores. Monomeric-Citrine-tagged MpSYP12B under the regulation of its own regulatory elements is expressed in oil body cells and localized to the envelopes of oil bodies and the plasma membrane. (from nomenclature)

2 core 9 peripheral

Kanazawa, T., et al. (2020) · Nature Communications  research experimental subject
Oil-body-cell-specific SYP1; localizes to oil body membrane; its promoter redirects SNAREs/cargo to the oil body — central to the redirection model.
Kanazawa, T., et al. (2016) · Plant and Cell Physiology  research experimental subject
Qa-SNARE (syntaxin); uniquely localized to the surface of the oil body, a liverwort-specific organelle — a distinctive feature of the M. polymorpha membrane-fusion machinery.
Kawamura, S., et al. (2022) · Plant & Cell Physiology  research citation tool
Protein known to be specifically expressed in oil body cells; used as a bait in the Functional Network analysis demonstration, found closely associated with MpMYB02.
Tanaka, M., et al. (2016b) · Phytochemistry  research experimental comparator
Oil-body-cell SNARE; mCitrine reporter used to mark oil body cells where sesquiterpenes and marchantin A localize in M. polymorpha.
Romani, F., et al. (2022) · Journal of Experimental Botany  research citation background
Review: cites MpSYP12B as required for oil-body (OB) cell formation; OB-cell-specific promoter.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp4g20670.1 chr4:27873633..27875956 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.