| Database | ID | Description |
|---|---|---|
| ProSitePatterns | PS00674 | AAA-protein family signature. |
| PANTHER | PTHR23074 | AAA DOMAIN-CONTAINING |
| Gene3D | G3DSA:3.40.50.300 | - |
| SMART | SM00745 | smart |
| FunFam | G3DSA:1.10.8.60:FF:000015 | vacuolar protein sorting-associated protein 4A |
| CDD | cd19521 | RecA-like_VPS4 |
| CDD | cd02678 | MIT_VPS4 |
| Gene3D | G3DSA:1.10.8.60 | - |
| Pfam | PF04212 | MIT (microtubule interacting and transport) domain |
| SMART | SM00382 | AAA_5 |
| Pfam | PF17862 | AAA+ lid domain |
| FunFam | G3DSA:3.40.50.300:FF:000043 | Vacuolar protein sorting-associated protein 4 |
| Gene3D | G3DSA:1.20.58.80 | - |
| SUPERFAMILY | SSF116846 | MIT domain |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) |
| FunFam | G3DSA:1.20.58.80:FF:000007 | Suppressor of K+ transport growth defect 1 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases |
| MobiDBLite | mobidb-lite | consensus disorder prediction |
| Pfam | PF09336 | Vps4 C terminal oligomerisation domain |
| KEGG | K12196 | vacuolar protein-sorting-associated protein 4 |
| KOG | KOG0739 | AAA+-type ATPase; [O] |
| MapolyID | Mapoly0064s0038 | - |
| GO | GO:0005524 | ATP binding |
| GO | GO:0016887 | ATP hydrolysis activity |
| GO | GO:0007033 | vacuole organization |
| GO | GO:0016197 | endosomal transport |
| GO | GO:0140603 | obsolete ATP hydrolysis activity |
No gene symbols are registered for this gene.
Tested as a co-localization partner: MpSPI PBW co-localizes entirely with MpSKD1, but no yeast two-hybrid interaction was detectable.
0 core 2 peripheral
Sequences: |
Gene UTR + CDS + intron |
| >Mp8g01610.1 CGTCTTGCCC CGAGCTTCAT ATTCTTCGTC GTCCGGCGTC CGGATTTAAG AAGAAGGCGC TCCCGCCCGC CGCTCGCCCG CCCGCGCTCT CCGTCGGGCG ACTCACAGAC TCACGGACTG ACTGACTGAC TGACTGGCCG ACAGACAGAC AGGCATCGGA TCATTCACCT CATCGGCGAG GCCGATTTCT CTTGCAGACC TCGGGCTTTC GTTTCGCGGA TTGCTTCGTC GTCCTCATCG TCGTTGCTGC CATCGTCGCG AGGCATGAGA TAAAGATAAA GACGCAACAG CAGCAGCAGG AGGAGGAGGA GCAGGAGGAG GAGGAAGAGG AGGATCGTGA CGCTGTTTGG TTGCGGGCTT TCGAGGCAAG CGAAAGGAAA TTGAGCACGA GGAAAGGAAG GAAGCAGGGC AGCAGAAGCG CAGGGCGAGC GACGCACAGG ACGGAGAGTG AGGCGAGGCG AGGCGAGGCG AGGAAGGTGG AGCAAGGAAG CGAAAAGTCA AGCGAGGTGA GTTTTTTTTC TGGGGGCTTC TGAGTGCGCA ATGTCGGTTC TTGTGTGATT CGGGATTGGG GTTTTCTTTT CTCGTCTCGG GGTCGGGTAG CAGCTTGCGG ATTGTGTTGC CGTGGGTCGA TTCCGGGATT GGTTCGATTG CATTCGGGGA GTGGCTCTGT CGTCTGCGCC TGGTTGCGTG TATGAGGGCG CTGGTAATCT TTTGAGTGGG GAGCTAGAGG GGCCTCGAGG GAGATCGGAA GGGGAGGTTG TTTTTTTCTT CTTGTTCGGA TTGCGGAGAG AGTTGGAGGC CGGGGCGGAT TGTGATTGTA GGGATCGGAG TTCCCAGTGC ATTTTTCCTG TTCATGCATC AGTTGTGGAG GAGGTCGAGA TCGGTTGCCT AGGTAGAGAT TCGACTGCCG CTTTTGAGCG TGTAGGTCAT TTTTTGCCTG GATTCGGATG TAGGTCGGCA TCTCAAGCCC GCGTCTGCCT CGTTGACTGC CGTTTGGATT TTCAGTCGTT CGAGGAGGAT CGAGGCGAGG CGGCCATCAT GACATGGGGC GAGAAATGGT CCGAGTGAAC TTCGGCTACC ATTCAACGGA CGATCCTTTG CGCGGTAGGG GCGGTATGGT CATACTAGGA AGTTCTCCTT TGTGGTAGTC GAGATTCCAT TCGTGTGGGA GGGAATTTGC AGCCGGAAGG AGCTAGCAAT TGTTGCGAGG ATCCAGTCAG CTGTTCTCAT CAACTGGTGT GATTTTGGCG GGCTCACTGG CGGTATCTGA GCTTTGGATC TTCGTTAGGT GTTCAGGGAT AAGGTAGTGG CTAGTGGACG TATCAGAAAC AGCACGTCGG TTTATGTTTT GATTACTCAA TCATGTACAG CAATTTCAAG GAGCAGGCCA TTGAGTTTGT GAGGCAAGCT GTGGCAGAGG ACAATGCCGG GAATTATGCC AAGGCGTTCC CCTTGTACAT GAATGCGTTG GAGTACTTCA AAACGCATCT CAAGTATGAG AAGAACCCCA AAATCAAAGA GGCGATTACT CAGAAATTCA CTGAATACCT GAGGAGGGCC GAAGAAATCA GAGCCGTGCT CGAAGAGGGA GTGCCCACCG CAGGTCCGCA AGCCAGGGGT GACGCAGCTG TCGCGACCAG GGCCAGGACC AAGGGAGGAA AGGATGGTGG TGGTGGTGGC GGCGAGGGAG GTGACGGGGA GGATCCGGAG CAAACGAAGT TGAGGTCGGG TTTGAACTCG GCCATCATTC GAGAAAAGCC TAATGTGAAA TGGAGTGATG TTGCAGGTTT AGAAAGTGCG AAGCAAGCTT TGCAAGAAGC AGTCATTCTG CCAGTAAAGT TTCCCCAGTT TTTTACCGGG AAAAGGAGAC CTTGGAGGGC GTTCCTGCTG TATGGACCTC CAGGAACCGG AAAGTCTTAC CTGGCCAAAG CCGTGGCCAC CGAAGCTGAT TCCACTTTCT TTAGCATTTC ATCATCCGAT TTGGTGTCCA AGTGGATGGG AGAGAGTGAG AAGCTAGTAG CAAATTTGTT CCAAATGGCA CGGGAGTGTG CACCGTCAAT CATATTTATT GATGAGATAG ATTCTCTCTG CGGAACTCGT GGGGAAGGAA ATGAAAGTGA GGCATCCCGC CGCATCAAGA CTGAGCTTCT GGTGCAAATG CAGGGCGTGG GAAATAACGA CCAAAAGGTC CTGATCTTAG CTGCCACGAA TACCCCGTAT TCCCTTGACC AGGCTGTGAG GAGGCGGTTT GACAAGCGTA TCTACATCCC ACTTCCAGAC CAGAAAGCGA GACAGCACAT GTTCAAGGTC CACTTGGGTG ACACACCTCA CAATCTGACT GAGCTTGACT TTGAGGATCT GGCTCGGAGA ACGGACGGCT ATTCAGGTTC AGATGTTTCT GTTGCTGTGA AGGATGTGCT CTTTGAGCCG GTGAGGAAGA CGCAAGATGC TATGCATTTC AGGAAGGTCC AGATGGAAAA CAATGGGAGC ATGGAGGAAA TGTGGATGCC TTGTGGTCCT CGTACTTCTG GAGCAGTGCA AACAACCATG ACGGAACTGG CTGCCAAGGG GCTTGGAAGT CAGATTCTAC CTCCCCCCAT AGAAAAGTCA GACTTTGATA AGGTCATTGC CCGACAAAGA CCCACAGTAA GCAAGCAAGA CTTGGAAATT CAAGAAAGAT TCACTCGTGA ATTTGGTGAG GAGGGTTGAA GGGGAGAGGT TTGCATCTCC CGACAGTCTT ATGTGAAATT CTTATGTCCG CCAGCCACAC ATACACACTT GTGTACAGTC ATCAAGTACT TGCTGGCGAA TCGTTGAAAC TTTCTGAGGA GAGTGAAAGT TATTGTCAGA GACCTCTCGA AGTTGTGGTG GAAAGTGAGC TCTAGAAGCC TGGTTATGTG TGAGCTGGCG GTATGTGTGT ACATCGAAGA GTAAGCTGGA CCTGTCCTTT ATTGTATGCT GAGGCCTTCT CTTGAATCTT ACCAATTAGT CGTCGATGTA ACGGCGATTG CCTTTTGATC ACTGATTACA TTAGCAAATA CGTAAAGTCC TGGAACCGAT TTTGCAATGA AAATAAATTA AATACTTGAT CCTGTTCGAT GCTCAGATTC TAGGTTCTTA AGTAGAATGA TGCAGGTGGT GAACTGGGAA TGAGCCAAGC TTCCTTGCTA GCACGCTAGT GTACATATGG AAAGCCTTTT AGTCAACTGG AGTACAGCCT GAGTGGATTT GAATGCAAAA CCTCTCACCA AAATTTCTTA TTCGTGAGTC CATGTCAGAA ATTTGCGTTT AAAATTGGTT GAGATGTTCG CCTGTTGTTA TGCTGGTCCC AGGACCCTGT TGAGTCCCGT TGGACTCAAA ATTTGATTTA TTCATTTGAT ATTGGTGTGG AACCTCCTAT GACTACTACA TGAGAATCGA CATTGGAGTT TTCTTGCTTG TTTTTAACTG TGTATTTTAA CATTGTTTTA CAGCCTTAGA ACAAGACCTG ATCAACAAAA AACTTGCCAA TCATCTTTGA TCAACTAAAT TGTGCTCAAC GTATTGGGTC AAAATTTTAT ATGTTACT |
mRNA UTR + CDS |
| >Mp8g01610.1 CGTCTTGCCC CGAGCTTCAT ATTCTTCGTC GTCCGGCGTC CGGATTTAAG AAGAAGGCGC TCCCGCCCGC CGCTCGCCCG CCCGCGCTCT CCGTCGGGCG ACTCACAGAC TCACGGACTG ACTGACTGAC TGACTGGCCG ACAGACAGAC AGGCATCGGA TCATTCACCT CATCGGCGAG GCCGATTTCT CTTGCAGACC TCGGGCTTTC GTTTCGCGGA TTGCTTCGTC GTCCTCATCG TCGTTGCTGC CATCGTCGCG AGGCATGAGA TAAAGATAAA GACGCAACAG CAGCAGCAGG AGGAGGAGGA GCAGGAGGAG GAGGAAGAGG AGGATCGTGA CGCTGTTTGG TTGCGGGCTT TCGAGGCAAG CGAAAGGAAA TTGAGCACGA GGAAAGGAAG GAAGCAGGGC AGCAGAAGCG CAGGGCGAGC GACGCACAGG ACGGAGAGTG AGGCGAGGCG AGGCGAGGCG AGGAAGGTGG AGCAAGGAAG CGAAAAGTCA AGCGAGGTCG GCATCTCAAG CCCGCGTCTG CCTCGTTGAC TGCCGTTTGG ATTTTCAGTC GTTCGAGGAG GATCGAGGCG AGGCGGCCAT CATGACATGG GGCGAGAAAT GGTCCGAGTG AACTTCGGCT ACCATTCAAC GGACGATCCT TTGCGCGGTA GGGGCGGTAT GGTCATACTA GGAAGTTCTC CTTTGTGGTA GTCGAGATTC CATTCGTGTG GGAGGGAATT TGCAGCCGGA AGGAGCTAGC AATTGTTGCG AGGATCCAGT CAGCTGTTCT CATCAACTGG TGTGATTTTG GCGGGCTCAC TGGCGGTATC TGAGCTTTGG ATCTTCGTTA GGTGTTCAGG GATAAGGTAG TGGCTAGTGG ACGTATCAGA AACAGCACGT CGGTTTATGT TTTGATTACT CAATCATGTA CAGCAATTTC AAGGAGCAGG CCATTGAGTT TGTGAGGCAA GCTGTGGCAG AGGACAATGC CGGGAATTAT GCCAAGGCGT TCCCCTTGTA CATGAATGCG TTGGAGTACT TCAAAACGCA TCTCAAGTAT GAGAAGAACC CCAAAATCAA AGAGGCGATT ACTCAGAAAT TCACTGAATA CCTGAGGAGG GCCGAAGAAA TCAGAGCCGT GCTCGAAGAG GGAGTGCCCA CCGCAGGTCC GCAAGCCAGG GGTGACGCAG CTGTCGCGAC CAGGGCCAGG ACCAAGGGAG GAAAGGATGG TGGTGGTGGT GGCGGCGAGG GAGGTGACGG GGAGGATCCG GAGCAAACGA AGTTGAGGTC GGGTTTGAAC TCGGCCATCA TTCGAGAAAA GCCTAATGTG AAATGGAGTG ATGTTGCAGG TTTAGAAAGT GCGAAGCAAG CTTTGCAAGA AGCAGTCATT CTGCCAGTAA AGTTTCCCCA GTTTTTTACC GGGAAAAGGA GACCTTGGAG GGCGTTCCTG CTGTATGGAC CTCCAGGAAC CGGAAAGTCT TACCTGGCCA AAGCCGTGGC CACCGAAGCT GATTCCACTT TCTTTAGCAT TTCATCATCC GATTTGGTGT CCAAGTGGAT GGGAGAGAGT GAGAAGCTAG TAGCAAATTT GTTCCAAATG GCACGGGAGT GTGCACCGTC AATCATATTT ATTGATGAGA TAGATTCTCT CTGCGGAACT CGTGGGGAAG GAAATGAAAG TGAGGCATCC CGCCGCATCA AGACTGAGCT TCTGGTGCAA ATGCAGGGCG TGGGAAATAA CGACCAAAAG GTCCTGATCT TAGCTGCCAC GAATACCCCG TATTCCCTTG ACCAGGCTGT GAGGAGGCGG TTTGACAAGC GTATCTACAT CCCACTTCCA GACCAGAAAG CGAGACAGCA CATGTTCAAG GTCCACTTGG GTGACACACC TCACAATCTG ACTGAGCTTG ACTTTGAGGA TCTGGCTCGG AGAACGGACG GCTATTCAGG TTCAGATGTT TCTGTTGCTG TGAAGGATGT GCTCTTTGAG CCGGTGAGGA AGACGCAAGA TGCTATGCAT TTCAGGAAGG TCCAGATGGA AAACAATGGG AGCATGGAGG AAATGTGGAT GCCTTGTGGT CCTCGTACTT CTGGAGCAGT GCAAACAACC ATGACGGAAC TGGCTGCCAA GGGGCTTGGA AGTCAGATTC TACCTCCCCC CATAGAAAAG TCAGACTTTG ATAAGGTCAT TGCCCGACAA AGACCCACAG TAAGCAAGCA AGACTTGGAA ATTCAAGAAA GATTCACTCG TGAATTTGGT GAGGAGGGTT GAAGGGGAGA GGTTTGCATC TCCCGACAGT CTTATGTGAA ATTCTTATGT CCGCCAGCCA CACATACACA CTTGTGTACA GTCATCAAGT ACTTGCTGGC GAATCGTTGA AACTTTCTGA GGAGAGTGAA AGTTATTGTC AGAGACCTCT CGAAGTTGTG GTGGAAAGTG AGCTCTAGAA GCCTGGTTAT GTGTGAGCTG GCGGTATGTG TGTACATCGA AGAGTAAGCT GGACCTGTCC TTTATTGTAT GCTGAGGCCT TCTCTTGAAT CTTACCAATT AGTCGTCGAT GTAACGGCGA TTGCCTTTTG ATCACTGATT ACATTAGCAA ATACGTAAAG TCCTGGAACC GATTTTGCAA TGAAAATAAA TTAAATACTT GATCCTGTTC GATGCTCAGA TTCTAGGTTC TTAAGTAGAA TGATGCAGGT GGTGAACTGG GAATGAGCCA AGCTTCCTTG CTAGCACGCT AGTGTACATA TGGAAAGCCT TTTAGTCAAC TGGAGTACAG CCTGAGTGGA TTTGAATGCA AAACCTCTCA CCAAAATTTC TTATTCGTGA GTCCATGTCA GAAATTTGCG TTTAAAATTG GTTGAGATGT TCGCCTGTTG TTATGCTGGT CCCAGGACCC TGTTGAGTCC CGTTGGACTC AAAATTTGAT TTATTCATTT GATATTGGTG TGGAACCTCC TATGACTACT ACATGAGAAT CGACATTGGA GTTTTCTTGC TTGTTTTTAA CTGTGTATTT TAACATTGTT TTACAGCCTT AGAACAAGAC CTGATCAACA AAAAACTTGC CAATCATCTT TGATCAACTA AATTGTGCTC AACGTATTGG GTCAAAATTT TATATGTTAC T |
CDS |
| >Mp8g01610.1 ATGTACAGCA ATTTCAAGGA GCAGGCCATT GAGTTTGTGA GGCAAGCTGT GGCAGAGGAC AATGCCGGGA ATTATGCCAA GGCGTTCCCC TTGTACATGA ATGCGTTGGA GTACTTCAAA ACGCATCTCA AGTATGAGAA GAACCCCAAA ATCAAAGAGG CGATTACTCA GAAATTCACT GAATACCTGA GGAGGGCCGA AGAAATCAGA GCCGTGCTCG AAGAGGGAGT GCCCACCGCA GGTCCGCAAG CCAGGGGTGA CGCAGCTGTC GCGACCAGGG CCAGGACCAA GGGAGGAAAG GATGGTGGTG GTGGTGGCGG CGAGGGAGGT GACGGGGAGG ATCCGGAGCA AACGAAGTTG AGGTCGGGTT TGAACTCGGC CATCATTCGA GAAAAGCCTA ATGTGAAATG GAGTGATGTT GCAGGTTTAG AAAGTGCGAA GCAAGCTTTG CAAGAAGCAG TCATTCTGCC AGTAAAGTTT CCCCAGTTTT TTACCGGGAA AAGGAGACCT TGGAGGGCGT TCCTGCTGTA TGGACCTCCA GGAACCGGAA AGTCTTACCT GGCCAAAGCC GTGGCCACCG AAGCTGATTC CACTTTCTTT AGCATTTCAT CATCCGATTT GGTGTCCAAG TGGATGGGAG AGAGTGAGAA GCTAGTAGCA AATTTGTTCC AAATGGCACG GGAGTGTGCA CCGTCAATCA TATTTATTGA TGAGATAGAT TCTCTCTGCG GAACTCGTGG GGAAGGAAAT GAAAGTGAGG CATCCCGCCG CATCAAGACT GAGCTTCTGG TGCAAATGCA GGGCGTGGGA AATAACGACC AAAAGGTCCT GATCTTAGCT GCCACGAATA CCCCGTATTC CCTTGACCAG GCTGTGAGGA GGCGGTTTGA CAAGCGTATC TACATCCCAC TTCCAGACCA GAAAGCGAGA CAGCACATGT TCAAGGTCCA CTTGGGTGAC ACACCTCACA ATCTGACTGA GCTTGACTTT GAGGATCTGG CTCGGAGAAC GGACGGCTAT TCAGGTTCAG ATGTTTCTGT TGCTGTGAAG GATGTGCTCT TTGAGCCGGT GAGGAAGACG CAAGATGCTA TGCATTTCAG GAAGGTCCAG ATGGAAAACA ATGGGAGCAT GGAGGAAATG TGGATGCCTT GTGGTCCTCG TACTTCTGGA GCAGTGCAAA CAACCATGAC GGAACTGGCT GCCAAGGGGC TTGGAAGTCA GATTCTACCT CCCCCCATAG AAAAGTCAGA CTTTGATAAG GTCATTGCCC GACAAAGACC CACAGTAAGC AAGCAAGACT TGGAAATTCA AGAAAGATTC ACTCGTGAAT TTGGTGAGGA GGGTTGA |
Protein |
| >Mp8g01610.1 MYSNFKEQAI EFVRQAVAED NAGNYAKAFP LYMNALEYFK THLKYEKNPK IKEAITQKFT EYLRRAEEIR AVLEEGVPTA GPQARGDAAV ATRARTKGGK DGGGGGGEGG DGEDPEQTKL RSGLNSAIIR EKPNVKWSDV AGLESAKQAL QEAVILPVKF PQFFTGKRRP WRAFLLYGPP GTGKSYLAKA VATEADSTFF SISSSDLVSK WMGESEKLVA NLFQMARECA PSIIFIDEID SLCGTRGEGN ESEASRRIKT ELLVQMQGVG NNDQKVLILA ATNTPYSLDQ AVRRRFDKRI YIPLPDQKAR QHMFKVHLGD TPHNLTELDF EDLARRTDGY SGSDVSVAVK DVLFEPVRKT QDAMHFRKVQ MENNGSMEEM WMPCGPRTSG AVQTTMTELA AKGLGSQILP PPIEKSDFDK VIARQRPTVS KQDLEIQERF TREFGEEG |