Mp8g01610



Description

Annotation

Database ID Description
ProSitePatterns PS00674 AAA-protein family signature.
PANTHER PTHR23074 AAA DOMAIN-CONTAINING
Gene3D G3DSA:3.40.50.300 -
SMART SM00745 smart
FunFam G3DSA:1.10.8.60:FF:000015 vacuolar protein sorting-associated protein 4A
CDD cd19521 RecA-like_VPS4
CDD cd02678 MIT_VPS4
Gene3D G3DSA:1.10.8.60 -
Pfam PF04212 MIT (microtubule interacting and transport) domain
SMART SM00382 AAA_5
Pfam PF17862 AAA+ lid domain
FunFam G3DSA:3.40.50.300:FF:000043 Vacuolar protein sorting-associated protein 4
Gene3D G3DSA:1.20.58.80 -
SUPERFAMILY SSF116846 MIT domain
Pfam PF00004 ATPase family associated with various cellular activities (AAA)
FunFam G3DSA:1.20.58.80:FF:000007 Suppressor of K+ transport growth defect 1
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF09336 Vps4 C terminal oligomerisation domain
KEGG K12196 vacuolar protein-sorting-associated protein 4
KOG KOG0739 AAA+-type ATPase; [O]
MapolyID Mapoly0064s0038 -
GO GO:0005524 ATP binding
GO GO:0016887 ATP hydrolysis activity
GO GO:0007033 vacuole organization
GO GO:0016197 endosomal transport
GO GO:0140603 obsolete ATP hydrolysis activity

Nomenclature

No gene symbols are registered for this gene.

Associated Literature (AI-based literature mining, Beta-version)

Tested as a co-localization partner: MpSPI PBW co-localizes entirely with MpSKD1, but no yeast two-hybrid interaction was detectable.

0 core 2 peripheral

Koebke, E., et al. (2022) · Frontiers in Plant Science  research experimental comparator
Tested as a co-localization partner: MpSPI PBW co-localizes entirely with MpSKD1, but no yeast two-hybrid interaction was detectable.
Westermann, J., et al. (2020) · Frontiers in Plant Science  research experimental tool
BiFC control partner fused to YFPN, producing clear punctate YFP signal to validate the interaction assay.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp8g01610.1 chr8:1755037..1758604 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.