Mp2g11050



Description

Annotation

Database ID Description
Pfam PF00957 Synaptobrevin
ProSiteProfiles PS50859 Longin domain profile.
CDD cd14824 Longin
PANTHER PTHR45837 VESICLE-TRAFFICKING PROTEIN SEC22B
FunFam G3DSA:1.20.5.110:FF:000028 25.3 kDa vesicle transport protein-like
FunFam G3DSA:3.30.450.50:FF:000003 25.3 kDa vesicle transport protein-like
Pfam PF13774 Regulated-SNARE-like domain
Gene3D G3DSA:1.20.5.110 -
SUPERFAMILY SSF64356 SNARE-like
CDD cd15866 R-SNARE_SEC22
Gene3D G3DSA:3.30.450.50 Longin domain
SMART SM01270 Longin_2
ProSiteProfiles PS50892 v-SNARE coiled-coil homology domain profile.
SUPERFAMILY SSF58038 SNARE fusion complex
KEGG K08517 vesicle transport protein SEC22
KOG KOG0862 Synaptobrevin/VAMP-like protein SEC22; [U]
MapolyID Mapoly0023s0071 -
GO GO:0005793 endoplasmic reticulum-Golgi intermediate compartment
GO GO:0005789 endoplasmic reticulum membrane
GO GO:0031201 SNARE complex
GO GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
GO GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO GO:0000139 Golgi membrane
GO GO:0012507 ER to Golgi transport vesicle membrane
GO GO:0048280 vesicle fusion with Golgi apparatus
GO GO:0005484 SNAP receptor activity

Nomenclature

Gene symbol Product Transcript ID Status
MpSEC22 Ortholog of Arabidopsis SEC22 genes Published

Associated Literature (AI-based literature mining, Beta-version)

Ortholog of Arabidopsis SEC22 genes; The transcript is detected in thalli, antheridiophores, archegoniophores, and sporelings. Citrine-tagged MpSEC22 driven by the cauliflower mosaic virus 35S promoter is localized to the endoplasmic reticulum. (from nomenclature)

0 core 4 peripheral

Bowman, J. L., et al. (2022) · Plant Cell  review citation comparator
Marchantia gene cited in Bowman et al. (2022) model-system review
Minamino, N., et al. (2022) · Development  research experimental comparator
SEC22 SNARE; endomembrane marker.
Kanazawa, T., et al. (2016) · Plant and Cell Physiology  research sequence comparator
SEC22 SNARE; family inventory.
Kanazawa, T., et al. (2020) · Nature Communications  research experimental tool
ER SNARE marker; compartment control.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp2g11050.1 chr2:12074157..12077545 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.