Mp1g23190



Description

Annotation

Database ID Description
ProSiteProfiles PS50821 PAZ domain profile.
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF02171 Piwi domain
ProSiteProfiles PS50822 Piwi domain profile.
PANTHER PTHR22891 EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
Gene3D G3DSA:3.40.50.2300 -
CDD cd04657 Piwi_ago-like
SMART SM00950 Piwi_a_2
SMART SM01163 DUF1785_2
CDD cd02846 PAZ_argonaute_like
SUPERFAMILY SSF53098 Ribonuclease H-like
Pfam PF16486 N-terminal domain of argonaute
SUPERFAMILY SSF101690 PAZ domain
Gene3D G3DSA:2.170.260.10 paz domain
Pfam PF16488 Argonaute linker 2 domain
Gene3D G3DSA:3.30.420.10 -
Pfam PF02170 PAZ domain
SMART SM00949 PAZ_2_a_3
Pfam PF08699 Argonaute linker 1 domain
KEGG K11593 eukaryotic translation initiation factor 2C
KOG KOG1041 Translation initiation factor 2C (eIF-2C) and related proteins; [J]
MapolyID Mapoly0065s0059 -
GO GO:0004521 RNA endonuclease activity
GO GO:0003723 RNA binding
GO GO:0005515 protein binding
GO GO:0035194 regulatory ncRNA-mediated post-transcriptional gene silencing
GO GO:0005737 cytoplasm
GO GO:0003676 nucleic acid binding

Nomenclature

Gene symbol Product Transcript ID Status
MpAGO4a miRNA biogenesis protein Provisional

Associated Literature (AI-based literature mining, Beta-version)

ARGONAUTE4a; sRNA effector.

1 core 2 peripheral

Tsuzuki, M., et al. (2016) · Plant and Cell Physiology  research experimental subject
ARGONAUTE4a; sRNA effector.
Pietrykowska, H., et al. (2022) · Journal of Experimental Botany  review citation background
miRNA biogenesis/effector (Pietrykowska 2022)
Hong, S.-F., et al. (2024) · Plant & Cell Physiology  research sequence comparator
ARGONAUTE4-like; AGO family member.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g23190.1 chr1:24693629..24700285 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.