Mp4g08580



Description

Annotation

Database ID Description
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
Pfam PF00400 WD domain, G-beta repeat
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile.
Coils Coil Coil
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile.
FunFam G3DSA:3.30.40.10:FF:000027 Pre-mRNA-processing factor 19, putative
Pfam PF08606 Prp19/Pso4-like
SMART SM00320 WD40_4
Gene3D G3DSA:2.130.10.10 -
SUPERFAMILY SSF57850 RING/U-box
CDD cd16656 RING-Ubox_PRP19
PANTHER PTHR43995 PRE-MRNA-PROCESSING FACTOR 19
MobiDBLite mobidb-lite consensus disorder prediction
SMART SM00504 Ubox_2
ProSiteProfiles PS51698 U-box domain profile.
SUPERFAMILY SSF50978 WD40 repeat-like
KEGG K10599 pre-mRNA-processing factor 19 [EC:2.3.2.27]
KOG KOG0289 mRNA splicing factor; C-term missing; [R]
MapolyID Mapoly0157s0021 -
GO GO:0071006 U2-type catalytic step 1 spliceosome
GO GO:0016567 protein ubiquitination
GO GO:0000974 Prp19 complex
GO GO:0005515 protein binding
GO GO:0000398 mRNA splicing, via spliceosome
GO GO:0004842 ubiquitin-protein transferase activity
GO GO:0061630 ubiquitin protein ligase activity
GO GO:0006281 DNA repair
GO GO:0005737 cytoplasm

Nomenclature

No gene symbols are registered for this gene.

Associated Literature (AI-based literature mining, Beta-version)

Added to the list of putative MpPUB genes based on sequence conservation.

0 core 1 peripheral

Lim, C. J., et al. (2024) · New Phytologist  research sequence background
Added to the list of putative MpPUB genes based on sequence conservation.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp4g08580.1 chr4:10958735..10965702 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.