Mp1g09040



Description

Annotation

Database ID Description
SMART SM00025 pum_5
Gene3D G3DSA:4.10.1000.10 -
ProSiteProfiles PS50303 Pumilio homology domain (PUM-HD) profile.
Gene3D G3DSA:1.25.10.10 -
Pfam PF00806 Pumilio-family RNA binding repeat
PANTHER PTHR12537 RNA BINDING PROTEIN PUMILIO-RELATED
ProSiteProfiles PS50302 Pumilio RNA-binding repeat profile.
SMART SM00356 c3hfinal6
SUPERFAMILY SSF90229 CCCH zinc finger
Pfam PF18345 Zinc finger domain
SUPERFAMILY SSF48371 ARM repeat
ProSiteProfiles PS50103 Zinc finger C3H1-type profile.
MobiDBLite mobidb-lite consensus disorder prediction
FunFam G3DSA:1.25.10.10:FF:000237 Pumilio homolog 9
CDD cd07920 Pumilio
KEGG K17943 pumilio RNA-binding family
KOG KOG2049 Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily); N-term missing; [J]
KOG KOG2057 Predicted equilibrative nucleoside transporter protein; N-term missing; [F]
MapolyID Mapoly0036s0144 -
GO GO:0003723 RNA binding
GO GO:0046872 metal ion binding
GO GO:0010608 post-transcriptional regulation of gene expression
GO GO:0003729 mRNA binding
GO GO:0005737 cytoplasm

Nomenclature

Gene symbol Product Transcript ID Status
MpC3H5 transcription factor, C3H Provisional
This is a provisional entry. If you want to update the entry, please contact the administrator.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g09040.1 chr1:9604850..9611429 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g09040 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g09040 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.