Mp1g15800



Description

Annotation

Database ID Description
CDD cd20071 SET_SMYD
ProSiteProfiles PS50280 SET domain profile.
MobiDBLite mobidb-lite consensus disorder prediction
SMART SM00028 tpr_5
Gene3D G3DSA:2.170.270.10 SET domain
SUPERFAMILY SSF48452 TPR-like
SUPERFAMILY SSF82199 SET domain
Pfam PF00856 SET domain
PANTHER PTHR47643 TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710)
Pfam PF13432 Tetratricopeptide repeat
ProSiteProfiles PS50005 TPR repeat profile.
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain
SMART SM00317 set_7
KOG KOG0553 TPR repeat-containing protein; C-term missing; [R]
KOG KOG2084 Predicted histone tail methylase containing SET domain; C-term missing; [B]
MapolyID Mapoly0033s0081 -
GO GO:0005515 protein binding

Nomenclature

Gene symbol Product Transcript ID Status
MpATXR1 Chromatin related protein Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp1g15800.1 chr1:16453648..16459026 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g15800 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g15800 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.