Mp1g25600



Description

Annotation

Database ID Description
SUPERFAMILY SSF52425 Cryptochrome/photolyase, N-terminal domain
Gene3D G3DSA:1.10.579.10 DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3
PANTHER PTHR11455 CRYPTOCHROME
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF03441 FAD binding domain of DNA photolyase
Pfam PF00875 DNA photolyase
Gene3D G3DSA:1.25.40.80 -
ProSiteProfiles PS51645 Photolyase/cryptochrome alpha/beta domain profile.
NCBIfam TIGR02765 DASH family cryptochrome
Gene3D G3DSA:3.40.50.620 HUPs
SUPERFAMILY SSF48173 Cryptochrome/photolyase FAD-binding domain
PRINTS PR00147 DNA photolyase signature
KEGG K25656 cryptochrome
KOG KOG0133 Deoxyribodipyrimidine photolyase/cryptochrome; [LT]
MapolyID Mapoly0002s0311 -
GO GO:0003904 deoxyribodipyrimidine photo-lyase activity
GO GO:0003913 DNA photolyase activity
GO GO:0006281 DNA repair
GO GO:0000719 photoreactive repair
GO GO:0071949 FAD binding
GO GO:0003677 DNA binding

Nomenclature

Gene symbol Product Transcript ID Status
MpCRY-DASH Photoreceptor, Light Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp1g25600.1 chr1:26890283..26896710 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g25600 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g25600 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.