Mp1g26580



Description

Annotation

Database ID Description
SUPERFAMILY SSF117070 LEA14-like
MobiDBLite mobidb-lite consensus disorder prediction
FunFam G3DSA:2.60.40.1820:FF:000003 Desiccation protectant protein Lea14 isogeny
Pfam PF03168 Late embryogenesis abundant protein
Gene3D G3DSA:2.60.40.1820 -
PANTHER PTHR31459 -
SMART SM00769 why
MapolyID Mapoly0002s0220 -
GO GO:0005829 cytosol
GO GO:0009269 response to desiccation

Nomenclature

Gene symbol Product Transcript ID Status
MpLEA-like6 Late-embryogenesis abundant protein Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp1g26580.1 chr1:27823419..27825688 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g26580.2 chr1:27823413..27825578 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g26580 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g26580 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.