Mp2g06020



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF144292 occludin/ELL-like
ProSiteProfiles PS51980 Occludin/ELL (OCEL) domain profile.
Gene3D G3DSA:6.10.140.340 -
PANTHER PTHR38372 DENTIN SIALOPHOSPHOPROTEIN-LIKE PROTEIN
Pfam PF07303 Occludin homology domain
KOG KOG4796 RNA polymerase II elongation factor; N-term missing; [K]
KOG KOG1874 KEKE-like motif-containing transcription regulator (Rlr1)/suppressor of sin4; N-term missing; [K]
MapolyID Mapoly0021s0057 -

Nomenclature

Gene symbol Product Transcript ID Status
MpCARP9 miRNA biogenesis protein Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp2g06020.1 chr2:6763709..6774922 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g06020 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g06020 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.