Mp3g01600



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:3.30.70.330 -
SUPERFAMILY SSF54928 RNA-binding domain, RBD
CDD cd12311 RRM_SRSF2_SRSF8
SMART SM00360 rrm1_1
PANTHER PTHR48028 GLYCINE-RICH RNA-BINDING PROTEIN RZ1A
Pfam PF00076 RNA recognition motif
ProSiteProfiles PS50102 Eukaryotic RNA Recognition Motif (RRM) profile.
FunFam G3DSA:3.30.70.330:FF:000192 Serine/arginine-rich splicing factor SC35
KEGG K12891 serine/arginine-rich splicing factor 2/8
KOG KOG4207 Predicted splicing factor, SR protein superfamily; C-term missing; [A]
MapolyID Mapoly0007s0152 -
GO GO:0003723 RNA binding
GO GO:0003676 nucleic acid binding

Nomenclature

Gene symbol Product Transcript ID Status
MpSR1 SR proteins, RNA-splicing Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp3g01600.1 chr3:1810666..1817779 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp3g01600.2 chr3:1810666..1817779 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g01600 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g01600 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.