Mp3g22400



Description

Annotation

Database ID Description
Pfam PF00076 RNA recognition motif
MobiDBLite mobidb-lite consensus disorder prediction
FunFam G3DSA:3.30.70.330:FF:000192 Serine/arginine-rich splicing factor SC35
CDD cd12311 RRM_SRSF2_SRSF8
Gene3D G3DSA:3.30.70.330 -
SUPERFAMILY SSF54928 RNA-binding domain, RBD
ProSiteProfiles PS50102 Eukaryotic RNA Recognition Motif (RRM) profile.
SMART SM00360 rrm1_1
PANTHER PTHR48028 GLYCINE-RICH RNA-BINDING PROTEIN RZ1A
KEGG K12891 serine/arginine-rich splicing factor 2/8
KOG KOG4207 Predicted splicing factor, SR protein superfamily; [A]
MapolyID Mapoly0024s0018 -
GO GO:0003723 RNA binding
GO GO:0003676 nucleic acid binding

Nomenclature

Gene symbol Product Transcript ID Status
MpSR2 SR proteins, RNA-splicing Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp3g22400.1 chr3:25250029..25256479 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp3g22400.2 chr3:25249892..25256500 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp3g22400.3 chr3:25249907..25256500 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g22400 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g22400 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.