Mp4g01880



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
SMART SM00360 rrm1_1
ProSiteProfiles PS50102 Eukaryotic RNA Recognition Motif (RRM) profile.
Gene3D G3DSA:3.30.70.330 -
SUPERFAMILY SSF54928 RNA-binding domain, RBD
Pfam PF00076 RNA recognition motif
PANTHER PTHR48034 TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED
KEGG K12900 serine/arginine-rich splicing factor 10
KOG KOG4207 Predicted splicing factor, SR protein superfamily; C-term missing; [A]
MapolyID Mapoly0098s0012 -
GO GO:0048026 positive regulation of mRNA splicing, via spliceosome
GO GO:0003723 RNA binding
GO GO:0003676 nucleic acid binding
GO GO:0005681 spliceosomal complex

Nomenclature

Gene symbol Product Transcript ID Status
MpSR3 SR proteins, RNA-splicing Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp4g01880.1 chr4:2329853..2335669 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp4g01880.2 chr4:2329853..2335669 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp4g01880 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp4g01880 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.