Mp4g03480



Description

Annotation

Database ID Description
SMART SM00571 testlast3
SUPERFAMILY SSF57903 FYVE/PHD zinc finger
SMART SM00249 PHD_3
CDD cd15489 PHD_SF
MobiDBLite mobidb-lite consensus disorder prediction
CDD cd20401 Tudor_AtPTM-like
PANTHER PTHR46508 PHD FINGER FAMILY PROTEIN
Pfam PF21743 PTM/DIR17-like, Tudor domain
Pfam PF15612 WSTF, HB1, Itc1p, MBD9 motif 1
Pfam PF00628 PHD-finger
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
ProSitePatterns PS01359 Zinc finger PHD-type signature.
Pfam PF02791 DDT domain
ProSiteProfiles PS50016 Zinc finger PHD-type profile.
Coils Coil Coil
ProSiteProfiles PS50827 DDT domain profile.
KOG KOG1473 Nucleosome remodeling factor, subunit NURF301/BPTF; C-term missing; [BK]
KOG KOG1473 Nucleosome remodeling factor, subunit NURF301/BPTF; N-term missing; [BK]
MapolyID Mapoly0044s0125 -

Nomenclature

Gene symbol Product Transcript ID Status
MpPTM1 GUN genes Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp4g03480.1 chr4:4786012..4796736 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp4g03480 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp4g03480 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.