Mp5g07670
Description
Annotation
| Database | ID | Description |
|---|---|---|
| PANTHER | PTHR45806 | SYNAPTOBREVIN HOMOLOG YKT6 |
| SUPERFAMILY | SSF58038 | SNARE fusion complex |
| ProSiteProfiles | PS50892 | v-SNARE coiled-coil homology domain profile. |
| SUPERFAMILY | SSF64356 | SNARE-like |
| PRINTS | PR00219 | Synaptobrevin signature |
| CDD | cd14824 | Longin |
| Gene3D | G3DSA:1.20.5.110 | - |
| Pfam | PF13774 | Regulated-SNARE-like domain |
| ProSiteProfiles | PS50859 | Longin domain profile. |
| CDD | cd15867 | R-SNARE_YKT6 |
| Gene3D | G3DSA:3.30.450.50 | Longin domain |
| Pfam | PF00957 | Synaptobrevin |
| SMART | SM01270 | Longin_2 |
| KEGG | K08516 | synaptobrevin homolog YKT6 |
| KOG | KOG0861 | SNARE protein YKT6, synaptobrevin/VAMP syperfamily; [U] |
| MapolyID | Mapoly0127s0017 | - |
| GO | GO:0016192 | vesicle-mediated transport |
| GO | GO:0005794 | Golgi apparatus |
| GO | GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport |
| GO | GO:0005484 | SNAP receptor activity |
| GO | GO:0016020 | membrane |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpYKT6 | Ortholog of Arabidopsis YKT6 genes | Published |
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp5g07670 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp5g07670.1 GCCGGTACTG CGCTTTCGGG CCCCTGGTCT GGTCTCACAG CCTTCCTTCC TTTCTTCATT CATTCCTTCC GTTCTGTGCT GTCATCGTCC GTAAATCAAC TTTCTCTCTG CTGCTGCTCC TGCTGCTGCG CGATCTGTCT CTCATCGATT CCGTGCTCGT TCGTACTGTT AACCTGGTGC AGCACAAGGG TGCTGCTGCT GCTGCCTGTC GCAATCCCGA TCCTGCTCCT CGTCTTGCGG GCGGACCTCG GGCTCGGGCT CCATTTTTCT CTGCCCTCCC TCGACCCCGG GTCTTGTGTC GCACCGACGT CTGGTGCTTC TATCCGCTTG GGAGATTCTC GCTTTCCAAG ACGCTGCGAG CCACATGCGG CTTCATTAGG TCAGGTTGTA TCCAATTCGA GAGTTGGAGT TCTGCCCGTG CCCATCTGTT GAGCTCCCTG GCGTAGGGTT CGTCCGTGCT CGCTTTTGTG TATCGGAGCG ATTTGGCTTT TTTCGGTTGT TTTGTGTTCC GGAGATTTGA GTCTGATCGT TTCCTCGAGG CGAGGAAGAG ATCGGAGCAC AGGGCGATGG ATCAGTGAGG AAGGGCTGTG GAGTAGAGGC ATGTGTATGA GCAGGCGAGA TCAGGAGGAA CGGGCGGAGG AGCTGCAAGA ATCTTTTGGA GAGTTCGAAT TGTCTGACAT TGTACGATTA GCAAGCGGAA AGAAAGGTAC AGGGGAGGAT CTTTAGACAG GCGGGCAGGG AATTTGCTGC GTCGAGAGGA TGAAGATTAC GGCCATTCTC CTGCTGAGAG CTGTTCCGGG CGGAGGAGCC GATCCTGTGG TTTTGGCAAA TGCGTCCGAT GTGAGTCAGT TTGGATATTT TCAGCGCTCT AGCGCGAAGG AGTTCATTCT TTTCGTGGCG CGTACGATCG CCAATCGCAC TCCTGGAGGT CAACGGCAGT CGGTACAACA AGATGGTTTG TCTCTTGATC CACGTCGGAC GTTCTGTAGT TGTTCTCTGT CTGCCGTTCA GGTTTGGACT ACTAAGGATG CATAGATCTG GACTTGCGCA CATGAATTGA AATTAAGAAT TCCTCTTTTG CATCTGTGCA GAGTACATGG TGCACTGCTA CAACAGGAAT GGTTTGTGTG CACTAGCATT CACAGATAAA GAATACCCTA TGCGCGCTGC CTTCTCAGTT ATTAATAAGG TACAGTGACC CCATCTTCGA CGTTGTTTCA GTGGACGGTT TCAATTTGCC AAAAGTTTGC ACTTTTGGGA AATTCGGGTT CTAGGAACTG GAGGTTTGCA GGAGACTAGA TCAGCAAACT CTAGGAAATT AAAGAGGCGG GTTATTGTAA TCTATATTTA AACTTGATTG ATGTATTTCG CCAATCCTTT GGTTCCAAAT ATTGAGTGAG TGATATGTTT ATTGCTGCTG TAATGTCAAT GCTACACTTA GACTGACCTG GTTTTCTTGG CTGACATATG TCATATTCTT CTGCAGGTCG TAGACGAGTA TCAGCAAACC TTTGGAAATT CCTGGCAAGT GCGAACGGAT GATAATAATG AAACGTGGCC CTACCTTGTG GATGCTCTGC AAAAATACCA GGTTAGTGTA TAGAATGCGT AAGTTGCAGT GAGAATTCAC CATGAACGGT TCATAATTTC TTGAGTAAGG GTGAAATTTT GAAGGTGATG TACGTGTACA TGATTTTTTT CAGTAATCGT CATGGTCAAT GTTGGTTAGA TACATTTTTT TTAAAAGTTT TTGTTTAAAT CGAAAAGGTA ACATGCATAA ACGACGAATT TGTCGTGATT GGTTTGTTCA ATGTTTCGGG CATGCCAAGT AGATCGTGGG ATTCGTGTGG ATTGTTTTTT TCTGAATTGT CTTTCTTCTA CTTTTCATCC TAGTAGTTTC ACTTTCATTC AACATGCTAT CTTGAAGATC AGACCTACAT CATCTCAGAG TCCCCGAGCC CTTTTAGTTT CGGGTTTCTG ACCCTTGTTT TTTATCGCTG AACTTTTCGT CTGCAGAACC CGACTGAAGC TGACAAGCTC TTGAAAATAC AGAAAGATCT CGATGAGACC AAAATTATTT TGGTAAGCGT TGCTTTTTTG GGATTGTAGT CAATGTAAAT GCATGTCTTG GTCTGGTCCA AGCTCAATCT GTCCACGAAC AACGACCAGC CTTGAGTCAG TAATTTTTAG TTGGATGCCC ATGTACAAAA ATGATGTCAT CCAGTTCTTA TGTGACCCAC ATCTGAATCG TGTACAAATC TTTTGCATCC TCATTTGTCT TGTTTACACT CTGCAGCATA AAACCATCGA CAGTGTGCTT GAACGAGGAG AGAAGTTAGA TACACTGGTG GATAAGAGCA CCGATCTTAG TGCTGCGTCT CAGGTACGCT ATCGAATTGA ATCTGTTGCA CAGTTGATGT GCTTTTCATC TACTAAGTAC TTACTCATGC ATTTTGTGGA TAAACTTCAA CTGTTAAGAC CAATTTCTAC TTTCCTTCTA AAGTTTTGAG AAAATTCGAA CGAAGAAACC TAAAGCATTG TAGAAGTCGT GCTATGTTTG TTCATGACCT TTCTCTAACT TTTGTGTCCT CTGCACGAAC TGGATTTGCA GCTATTTTAC AAGCAAGCAA AGAAGGCAAA CCAGTGTTGT TCGATATTGT GAAGTCTGCC GGAAGGCAGG AGTAGATTTG TGGGGTTAGT GACTTTGAAT TGGTGCTGCG AAGGTATGAG TCACGAATTA GCTCAAGCAA AACTTCTGTT CAGATTCTTG ATTCTTGTTA CGAGCCAAGG CTAGAATTTT TCCGAGTTGG GGCATACATT TACACCACAA GAATCTCAGA GTAGTTCCAG ATCATAGCGA TTTGTTACAA AGTGCTTGCA TGTGCGTATG GGTCTAATCT ATTCTCTTCT GTGAGAGTAG AAGAGCTTCT GCACTTCAGA ATCTCTTACT CTTGCTGAAG GGTCTTTGTA CAGGACATAC CTGCAGCCAT TTGAACTACT CTCTCCTGGT ATTGAGAATA AGTTTAGTTG TTATCCTATC CAATTTGAAA TAGGATGGTT TGTAAGAAAC ACGTTTACTA GATTATCACT GTCGATAGCT TGGGTTCGGC TTCATGTATC GCGCTGCAGA GAAGCCGGTG GGTTGGGTGG ATGGATGTTA TCCCTTCAGA GAGGTCGGTT TTTGTATCTT TTTACTTCTC GTCCGTGTCC GTATCTGTCC CGTAATACTT TGGGTAAAGA GAGCCATGAC CAGTAGAGAG TGCAGTGTTT CCCGTTTCAG GTTCATGCAG CTCTCTTCTG CTGAGGATAT GACTAGAGAC CTTCATTCAT GGCACGTTTG TACATTGTAA GATTGATTAT TGTCGTCGGT CAGGTCAGCA GCAGTAACCC TTTCAAATTG TTGATGGTTT CGCGCCGGAT GAAGCCTCAT GGTGTGTAAT TATGCCCTCA TCTGCCATTT GCATAAATTG GACTCACTTT GTATATTTGG AGTAAATTGT TACACCATGA CATCTCATG |
mRNA UTR + CDS |
| >Mp5g07670.1 GCCGGTACTG CGCTTTCGGG CCCCTGGTCT GGTCTCACAG CCTTCCTTCC TTTCTTCATT CATTCCTTCC GTTCTGTGCT GTCATCGTCC GTAAATCAAC TTTCTCTCTG CTGCTGCTCC TGCTGCTGCG CGATCTGTCT CTCATCGATT CCGTGCTCGT TCGTACTGTT AACCTGGTGC AGCACAAGGG TGCTGCTGCT GCTGCCTGTC GCAATCCCGA TCCTGCTCCT CGTCTTGCGG GCGGACCTCG GGCTCGGGCT CCATTTTTCT CTGCCCTCCC TCGACCCCGG GTCTTGTGTC GCACCGACGT CTGGTGCTTC TATCCGCTTG GGAGATTCTC GCTTTCCAAG ACGCTGCGAG CCACATGCGG CTTCATTAGG TCAGGTTGTA TCCAATTCGA GAGTTGGAGT TCTGCCCGTG CCCATCTGTT GAGCTCCCTG GCGTAGGGTT CGTCCGTGCT CGCTTTTGTG TATCGGAGCG ATTTGGCTTT TTTCGGTTGT TTTGTGTTCC GGAGATTTGA GTCTGATCGT TTCCTCGAGG CGAGGAAGAG ATCGGAGCAC AGGGCGATGG ATCAGTGAGG AAGGGCTGTG GAGTAGAGGC ATGTGTATGA GCAGGCGAGA TCAGGAGGAA CGGGCGGAGG AGCTGCAAGA ATCTTTTGGA GAGTTCGAAT TGTCTGACAT TGTACGATTA GCAAGCGGAA AGAAAGGTAC AGGGGAGGAT CTTTAGACAG GCGGGCAGGG AATTTGCTGC GTCGAGAGGA TGAAGATTAC GGCCATTCTC CTGCTGAGAG CTGTTCCGGG CGGAGGAGCC GATCCTGTGG TTTTGGCAAA TGCGTCCGAT GTGAGTCAGT TTGGATATTT TCAGCGCTCT AGCGCGAAGG AGTTCATTCT TTTCGTGGCG CGTACGATCG CCAATCGCAC TCCTGGAGGT CAACGGCAGT CGGTACAACA AGATGAGTAC ATGGTGCACT GCTACAACAG GAATGGTTTG TGTGCACTAG CATTCACAGA TAAAGAATAC CCTATGCGCG CTGCCTTCTC AGTTATTAAT AAGGTCGTAG ACGAGTATCA GCAAACCTTT GGAAATTCCT GGCAAGTGCG AACGGATGAT AATAATGAAA CGTGGCCCTA CCTTGTGGAT GCTCTGCAAA AATACCAGAA CCCGACTGAA GCTGACAAGC TCTTGAAAAT ACAGAAAGAT CTCGATGAGA CCAAAATTAT TTTGCATAAA ACCATCGACA GTGTGCTTGA ACGAGGAGAG AAGTTAGATA CACTGGTGGA TAAGAGCACC GATCTTAGTG CTGCGTCTCA GCTATTTTAC AAGCAAGCAA AGAAGGCAAA CCAGTGTTGT TCGATATTGT GAAGTCTGCC GGAAGGCAGG AGTAGATTTG TGGGGTTAGT GACTTTGAAT TGGTGCTGCG AAGGTATGAG TCACGAATTA GCTCAAGCAA AACTTCTGTT CAGATTCTTG ATTCTTGTTA CGAGCCAAGG CTAGAATTTT TCCGAGTTGG GGCATACATT TACACCACAA GAATCTCAGA GTAGTTCCAG ATCATAGCGA TTTGTTACAA AGTGCTTGCA TGTGCGTATG GGTCTAATCT ATTCTCTTCT GTGAGAGTAG AAGAGCTTCT GCACTTCAGA ATCTCTTACT CTTGCTGAAG GGTCTTTGTA CAGGACATAC CTGCAGCCAT TTGAACTACT CTCTCCTGGT ATTGAGAATA AGTTTAGTTG TTATCCTATC CAATTTGAAA TAGGATGGTT TGTAAGAAAC ACGTTTACTA GATTATCACT GTCGATAGCT TGGGTTCGGC TTCATGTATC GCGCTGCAGA GAAGCCGGTG GGTTGGGTGG ATGGATGTTA TCCCTTCAGA GAGGTCGGTT TTTGTATCTT TTTACTTCTC GTCCGTGTCC GTATCTGTCC CGTAATACTT TGGGTAAAGA GAGCCATGAC CAGTAGAGAG TGCAGTGTTT CCCGTTTCAG GTTCATGCAG CTCTCTTCTG CTGAGGATAT GACTAGAGAC CTTCATTCAT GGCACGTTTG TACATTGTAA GATTGATTAT TGTCGTCGGT CAGGTCAGCA GCAGTAACCC TTTCAAATTG TTGATGGTTT CGCGCCGGAT GAAGCCTCAT GGTGTGTAAT TATGCCCTCA TCTGCCATTT GCATAAATTG GACTCACTTT GTATATTTGG AGTAAATTGT TACACCATGA CATCTCATG |
CDS |
| >Mp5g07670.1 ATGAAGATTA CGGCCATTCT CCTGCTGAGA GCTGTTCCGG GCGGAGGAGC CGATCCTGTG GTTTTGGCAA ATGCGTCCGA TGTGAGTCAG TTTGGATATT TTCAGCGCTC TAGCGCGAAG GAGTTCATTC TTTTCGTGGC GCGTACGATC GCCAATCGCA CTCCTGGAGG TCAACGGCAG TCGGTACAAC AAGATGAGTA CATGGTGCAC TGCTACAACA GGAATGGTTT GTGTGCACTA GCATTCACAG ATAAAGAATA CCCTATGCGC GCTGCCTTCT CAGTTATTAA TAAGGTCGTA GACGAGTATC AGCAAACCTT TGGAAATTCC TGGCAAGTGC GAACGGATGA TAATAATGAA ACGTGGCCCT ACCTTGTGGA TGCTCTGCAA AAATACCAGA ACCCGACTGA AGCTGACAAG CTCTTGAAAA TACAGAAAGA TCTCGATGAG ACCAAAATTA TTTTGCATAA AACCATCGAC AGTGTGCTTG AACGAGGAGA GAAGTTAGAT ACACTGGTGG ATAAGAGCAC CGATCTTAGT GCTGCGTCTC AGCTATTTTA CAAGCAAGCA AAGAAGGCAA ACCAGTGTTG TTCGATATTG TGA |
Protein |
| >Mp5g07670.1 MKITAILLLR AVPGGGADPV VLANASDVSQ FGYFQRSSAK EFILFVARTI ANRTPGGQRQ SVQQDEYMVH CYNRNGLCAL AFTDKEYPMR AAFSVINKVV DEYQQTFGNS WQVRTDDNNE TWPYLVDALQ KYQNPTEADK LLKIQKDLDE TKIILHKTID SVLERGEKLD TLVDKSTDLS AASQLFYKQA KKANQCCSIL |