Mp5g19130



Description

Annotation

Database ID Description
CDD cd09323 TDT_SLAC1_like
Gene3D G3DSA:1.50.10.150 -
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF03595 Voltage-dependent anion channel
PANTHER PTHR31269 S-TYPE ANION CHANNEL SLAH3
MapolyID Mapoly0073s0030 -
GO GO:0055085 transmembrane transport
GO GO:0006873 intracellular monoatomic ion homeostasis
GO GO:0008308 voltage-gated monoatomic anion channel activity
GO GO:0016020 membrane

Nomenclature

Gene symbol Product Transcript ID Status
MpSLAC1 S-type anion channel Published

Transcript models

Transcript ID Location Sequences Extract region
Mp5g19130.1 chr5:23508370..23514018 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g19130.2 chr5:23507346..23514018 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g19130.3 chr5:23508370..23514018 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp5g19130 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp5g19130 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.