Mp8g16760



Description

Annotation

Database ID Description
Pfam PF17292 POB3-like N-terminal PH domain
Gene3D G3DSA:2.30.29.30 -
PANTHER PTHR45849 FACT COMPLEX SUBUNIT SSRP1
PRINTS PR00887 Structure-specific recognition protein signature
SMART SM01287 Rtt106_2
SUPERFAMILY SSF47095 HMG-box
FunFam G3DSA:2.30.29.150:FF:000001 Fact complex subunit ssrp1
FunFam G3DSA:1.10.30.10:FF:000016 FACT complex subunit SSRP1
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:2.30.29.150 -
FunFam G3DSA:2.30.29.220:FF:000002 FACT complex subunit SSRP1
Gene3D G3DSA:1.10.30.10 High mobility group box domain
Pfam PF08512 Histone chaperone Rttp106-like, middle domain
Gene3D G3DSA:2.30.29.220 -
CDD cd22013 HMG-box_AtSSRP1
SUPERFAMILY SSF50729 PH domain-like
FunFam G3DSA:2.30.29.30:FF:000214 FACT complex subunit SSRP1
SMART SM00398 hmgende2
Pfam PF00505 HMG (high mobility group) box
CDD cd13231 PH2_SSRP1-like
ProSiteProfiles PS50118 HMG boxes A and B DNA-binding domains profile.
CDD cd13230 PH1_SSRP1-like
Pfam PF03531 Structure-specific recognition protein (SSRP1)
Pfam PF21103 SSRP1 PH domain
KEGG K09272 FACT complex subunit SSRP1/POB3
KOG KOG0526 Nucleosome-binding factor SPN, POB3 subunit; [KLB]
MapolyID Mapoly0030s0009 -
GO GO:0005634 nucleus
GO GO:0031491 nucleosome binding
GO GO:0035101 FACT complex
GO GO:0003677 DNA binding
GO GO:0042393 histone binding

Nomenclature

Gene symbol Product Transcript ID Status
MpHMGBOX3 transcription factor, HMG-box Published

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp8g16760.1 chr8:21555080..21562687 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp8g16760.2 chr8:21555924..21562687 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.