Mp1g05220



Description

Annotation

Database ID Description
CDD cd00332 PAL-HAL
Pfam PF00221 Aromatic amino acid lyase
Coils Coil Coil
Gene3D G3DSA:1.10.275.10 -
Gene3D G3DSA:1.10.274.20 -
PANTHER PTHR10362 HISTIDINE AMMONIA-LYASE
FunFam G3DSA:1.10.275.10:FF:000009 Phenylalanine ammonia-lyase
Gene3D G3DSA:1.20.200.10 Fumarase/aspartase (Central domain)
ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature.
NCBIfam TIGR01226 phenylalanine ammonia-lyase
SUPERFAMILY SSF48557 L-aspartase-like
KEGG K10775 phenylalanine ammonia-lyase [EC:4.3.1.24]
KOG KOG0222 Phenylalanine and histidine ammonia-lyase; [Q]
MapolyID Mapoly0005s0086 -
GO GO:0006559 L-phenylalanine catabolic process
GO GO:0005737 cytoplasm
GO GO:0003824 catalytic activity
GO GO:0016841 ammonia-lyase activity

Nomenclature

Gene symbol Product Transcript ID Status
MpPAL9 Secondary metabolism enzyme, Salicylic acid related protein Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp1g05220.1 chr1:5621367..5624401 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g05220 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g05220 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.