Mp1g05400



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:3.30.1370.210 -
SMART SM00356 c3hfinal6
Pfam PF00642 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
ProSiteProfiles PS50103 Zinc finger C3H1-type profile.
PANTHER PTHR36886 PROTEIN FRIGIDA-ESSENTIAL 1
KOG KOG1092 Ypt/Rab-specific GTPase-activating protein GYP1; C-term missing; [U]
KOG KOG0260 RNA polymerase II, large subunit; N-term missing; [K]
MapolyID Mapoly0005s0067 -
GO GO:0046872 metal ion binding

Nomenclature

Gene symbol Product Transcript ID Status
MpC3H3 transcription factor, C3H Provisional
This is a provisional entry. If you want to update the entry, please contact the administrator.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g05400.1 chr1:5836580..5852521 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g05400 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g05400 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.