Mp1g06600
Description
Annotation
| Database | ID | Description |
|---|---|---|
| PANTHER | PTHR47750 | F-BOX PROTEIN SNE |
| FunFam | G3DSA:1.20.1280.50:FF:000067 | F-box protein GID2 |
| Pfam | PF12937 | F-box-like |
| Gene3D | G3DSA:1.20.1280.50 | - |
| SMART | SM00256 | fbox_2 |
| ProSiteProfiles | PS50181 | F-box domain profile. |
| SUPERFAMILY | SSF81383 | F-box domain |
| CDD | cd22151 | F-box_AtGID2-like |
| KEGG | K14495 | F-box protein GID2 |
| KOG | KOG2997 | F-box protein FBX9; N-term missing; C-term missing; [R] |
| MapolyID | Mapoly0043s0052 | - |
| GO | GO:0005515 | protein binding |
| GO | GO:0009937 | regulation of gibberellic acid mediated signaling pathway |
| GO | GO:0019005 | SCF ubiquitin ligase complex |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpGID2 | F-box protein GIBBERELLIN INSENSITIVE DWARF 2 | Published |
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp1g06600 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp1g06600.1 GCCGAGTAGT ACCACGTTAG AGAAAAGTCT GGTCCATTTC AGTCAAGGTG TACTCCTAAC CTCTGCTCTG CTCTGCTGCG GGTGCTTCGG ACCCACTGCG AACTACGCCA CCGCGCCTCC CTCGGCATCA TGCTCATCAA ATAGGCCATA GCTCCCAATA TCTCCTCCCC TATTTGATGT GTGTGAAACT CGCTGCATCT CCTCTCGCCA CTCTCTCGAG TCCCAACGAG TTGTAGAAAC ATAGCGCGAA AGACCAAGGC GAGCTTTAGC TGCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTGC CCTTGCCTGC TGCTGCTGGA GTCTGCTGTC AGTCAGCTCC TTCCATCATA ACATGGGATG TGCTCATTGG AGGCTCACTC TTAGCTGCCC GCGCGCGCGC GCGCTCGCTC AGAAGGGATG TGGTGATAGT CCATTGTCAG ACAGTTTCCA CTGAGAGCCC TGAGACCTGC AGCTCTGTGG AGGTCTGACC GACTCCGCGA ACTCTCTAAT TGAACACGTA TTGGATTCCC TTCATCACAC GCACTGGTCA GCTCGCGCAC CTGCGGTGGT GGTGGTGGTT GTTGTTGCTC TCAACTCCAA CATCCATGAA CGAAATAAAG CTCTCAAGGA AGATAATTCT CCGGCTGACT CCCAGTTTAA GGAGCCCGCC CTTGGCGTTC TCGACTGTCA TTTCTCCGAC TTCTTGCGCC TCCTCCTCCT CCACCACCAC CACTCTTGCG CGATCATCCT TCTGCTCATC ATCATCGTCA TCGTCTGCCT GCGAATCGCG AGCGAGCGAG TGAATGAGAG CCGGAGGTGC CGTCGGGAGA GGTCCATTCT CGCCACGCTT CGTTATTGCG GCTCGATTCG GGAGACCTTG CGAAGCAGGT GGTTTGTCGT AGGGACTGCA GAGAAGGAGC ACGCATTTTA ATTGGTGGCA CAGCAGAGCA GAGCAGAGGA TCGAGAACAG GGTCGTCGGG CAGAAAATGG TGTCAATTTT CGAATGCCAA TTGGTGGACG GGCATCATCA TCAGGAAACG AGGTGGATAG CGAGGGAAGG AGCCAAGAGG CAAAAAGTGG TGACGACCCT TCAAATGGAC AGCAATGATG ATATTATTTA CGAGGTCATG AAGCATCTGG ACGCCAAATC TCTAGCCACG GCCACCTGCG TTTCGAAGCA GTGGCGCAAA GTTGCGGAGG ATGAGAGTTT GTGGGAGAAT GTGTGCATTC AGCACTGGCC ATCGCCCGTC GCTCGGCAAA AGCAGCTGCG CTCGGTCGTC CTGGCGCTGG GAGGGTTTCG CCGGCTGTAC GTGCTGTGCC TGCGGCCGCT GCTGGCGAGG GGGCGGCCGC AACCGCAGGC TCTGCCGTCG TCCTTGAAGG GCGCAGAGGA GAGCGGCGAG CGCGAATGGA GCAAAGACGA AGTGCATCTG TCGCTGTCGC TCTTTTCCAT CGATTGTTAC GAGAGACTGG GCCGTCGTCA CATGACCCCG TCGTCGATGA AGTTTCTTTG CAAGCCGTCG GCAAATCTGT CGATTGGAGC CCACCGCATG CTCGGGCTCG GGCAACAACA ACAATCCGCA TCGAATGTAC GGTGACCATG ACGACGAGCA AGCTTCAAAT TCCGATTCTC GGATTCTTGC CAATGGCTTC TTCGGACGGG AACTCCGCAA TGCCGAAAGA AAGCCCGGCG GTGCTGGGCT TTCTTGATTT CAGGCATTGA AGCTGGTTTC TTTCTTCCCG GCACCATCGT TTGCTGAAAT TCTCGACCAG CGCTGATCCA GGTGGAAGAG GAGTTTTCTC GGTCGTACAC TTGCGAAGCG CATGCGTCGA ACGAATGGGC GCAGGAATCA ATCCTGTCCC GCAGCAGCAG CAGCAACTTT GGGGAGTCGC AAGAGGGACT TCAATTGCGG CCAGTCCTTC CGGGGGGACG GAGACGGGAA TGTCAGTGGA GGTCAGCGTC GCATCGATCC TGTGTACACA CTGAAGCCTG ACGTGCCGAG GGTTCCCGAA CATTATACTC GGGAGCGCGG ACACAACATG GCGAGTGTAC AGATTCTGGT GTGAGAAGAA TGCCGACACA TTTTGGGGAG TGGTTGCTTC ATAACCTCTA TGGAGCGGTT TTGTCTAGCA TCTGTAGCTG TAGGACCTTA TTACGCGAAC AAGGGGGCCG CTGCCTTGTT GAGCTGTAAT CAGGCATTCA TTCTTGAGAT TTCATAGACG CAGACGATTG TAGATCAATT AGGAACATAT CACAGGCAGA CGCTAGGGCA GGATGGATGG ATGAAGGAAT GAATTCACAG AGTCCTTGTT GTATAAGAAA GAGCGGCGAC GAGGCCAGTC CCCGAGTACA TGACACCGAC ACTGACACTG CCTCGTGCAA TGTTGATCAT GCGCACCCAT TGTCACTTCT TTAGAACCGC CAAGCGGAAT AAAGTCACCC ACAAACAAAC ATGTGATGTA AACCGTTCAA TTGAAATCCA TGCACTGGCT TTCGT |
mRNA UTR + CDS |
| >Mp1g06600.1 GCCGAGTAGT ACCACGTTAG AGAAAAGTCT GGTCCATTTC AGTCAAGGTG TACTCCTAAC CTCTGCTCTG CTCTGCTGCG GGTGCTTCGG ACCCACTGCG AACTACGCCA CCGCGCCTCC CTCGGCATCA TGCTCATCAA ATAGGCCATA GCTCCCAATA TCTCCTCCCC TATTTGATGT GTGTGAAACT CGCTGCATCT CCTCTCGCCA CTCTCTCGAG TCCCAACGAG TTGTAGAAAC ATAGCGCGAA AGACCAAGGC GAGCTTTAGC TGCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTGC CCTTGCCTGC TGCTGCTGGA GTCTGCTGTC AGTCAGCTCC TTCCATCATA ACATGGGATG TGCTCATTGG AGGCTCACTC TTAGCTGCCC GCGCGCGCGC GCGCTCGCTC AGAAGGGATG TGGTGATAGT CCATTGTCAG ACAGTTTCCA CTGAGAGCCC TGAGACCTGC AGCTCTGTGG AGGTCTGACC GACTCCGCGA ACTCTCTAAT TGAACACGTA TTGGATTCCC TTCATCACAC GCACTGGTCA GCTCGCGCAC CTGCGGTGGT GGTGGTGGTT GTTGTTGCTC TCAACTCCAA CATCCATGAA CGAAATAAAG CTCTCAAGGA AGATAATTCT CCGGCTGACT CCCAGTTTAA GGAGCCCGCC CTTGGCGTTC TCGACTGTCA TTTCTCCGAC TTCTTGCGCC TCCTCCTCCT CCACCACCAC CACTCTTGCG CGATCATCCT TCTGCTCATC ATCATCGTCA TCGTCTGCCT GCGAATCGCG AGCGAGCGAG TGAATGAGAG CCGGAGGTGC CGTCGGGAGA GGTCCATTCT CGCCACGCTT CGTTATTGCG GCTCGATTCG GGAGACCTTG CGAAGCAGGT GGTTTGTCGT AGGGACTGCA GAGAAGGAGC ACGCATTTTA ATTGGTGGCA CAGCAGAGCA GAGCAGAGGA TCGAGAACAG GGTCGTCGGG CAGAAAATGG TGTCAATTTT CGAATGCCAA TTGGTGGACG GGCATCATCA TCAGGAAACG AGGTGGATAG CGAGGGAAGG AGCCAAGAGG CAAAAAGTGG TGACGACCCT TCAAATGGAC AGCAATGATG ATATTATTTA CGAGGTCATG AAGCATCTGG ACGCCAAATC TCTAGCCACG GCCACCTGCG TTTCGAAGCA GTGGCGCAAA GTTGCGGAGG ATGAGAGTTT GTGGGAGAAT GTGTGCATTC AGCACTGGCC ATCGCCCGTC GCTCGGCAAA AGCAGCTGCG CTCGGTCGTC CTGGCGCTGG GAGGGTTTCG CCGGCTGTAC GTGCTGTGCC TGCGGCCGCT GCTGGCGAGG GGGCGGCCGC AACCGCAGGC TCTGCCGTCG TCCTTGAAGG GCGCAGAGGA GAGCGGCGAG CGCGAATGGA GCAAAGACGA AGTGCATCTG TCGCTGTCGC TCTTTTCCAT CGATTGTTAC GAGAGACTGG GCCGTCGTCA CATGACCCCG TCGTCGATGA AGTTTCTTTG CAAGCCGTCG GCAAATCTGT CGATTGGAGC CCACCGCATG CTCGGGCTCG GGCAACAACA ACAATCCGCA TCGAATGTAC GGTGACCATG ACGACGAGCA AGCTTCAAAT TCCGATTCTC GGATTCTTGC CAATGGCTTC TTCGGACGGG AACTCCGCAA TGCCGAAAGA AAGCCCGGCG GTGCTGGGCT TTCTTGATTT CAGGCATTGA AGCTGGTTTC TTTCTTCCCG GCACCATCGT TTGCTGAAAT TCTCGACCAG CGCTGATCCA GGTGGAAGAG GAGTTTTCTC GGTCGTACAC TTGCGAAGCG CATGCGTCGA ACGAATGGGC GCAGGAATCA ATCCTGTCCC GCAGCAGCAG CAGCAACTTT GGGGAGTCGC AAGAGGGACT TCAATTGCGG CCAGTCCTTC CGGGGGGACG GAGACGGGAA TGTCAGTGGA GGTCAGCGTC GCATCGATCC TGTGTACACA CTGAAGCCTG ACGTGCCGAG GGTTCCCGAA CATTATACTC GGGAGCGCGG ACACAACATG GCGAGTGTAC AGATTCTGGT GTGAGAAGAA TGCCGACACA TTTTGGGGAG TGGTTGCTTC ATAACCTCTA TGGAGCGGTT TTGTCTAGCA TCTGTAGCTG TAGGACCTTA TTACGCGAAC AAGGGGGCCG CTGCCTTGTT GAGCTGTAAT CAGGCATTCA TTCTTGAGAT TTCATAGACG CAGACGATTG TAGATCAATT AGGAACATAT CACAGGCAGA CGCTAGGGCA GGATGGATGG ATGAAGGAAT GAATTCACAG AGTCCTTGTT GTATAAGAAA GAGCGGCGAC GAGGCCAGTC CCCGAGTACA TGACACCGAC ACTGACACTG CCTCGTGCAA TGTTGATCAT GCGCACCCAT TGTCACTTCT TTAGAACCGC CAAGCGGAAT AAAGTCACCC ACAAACAAAC ATGTGATGTA AACCGTTCAA TTGAAATCCA TGCACTGGCT TTCGT |
CDS |
| >Mp1g06600.1 ATGGTGTCAA TTTTCGAATG CCAATTGGTG GACGGGCATC ATCATCAGGA AACGAGGTGG ATAGCGAGGG AAGGAGCCAA GAGGCAAAAA GTGGTGACGA CCCTTCAAAT GGACAGCAAT GATGATATTA TTTACGAGGT CATGAAGCAT CTGGACGCCA AATCTCTAGC CACGGCCACC TGCGTTTCGA AGCAGTGGCG CAAAGTTGCG GAGGATGAGA GTTTGTGGGA GAATGTGTGC ATTCAGCACT GGCCATCGCC CGTCGCTCGG CAAAAGCAGC TGCGCTCGGT CGTCCTGGCG CTGGGAGGGT TTCGCCGGCT GTACGTGCTG TGCCTGCGGC CGCTGCTGGC GAGGGGGCGG CCGCAACCGC AGGCTCTGCC GTCGTCCTTG AAGGGCGCAG AGGAGAGCGG CGAGCGCGAA TGGAGCAAAG ACGAAGTGCA TCTGTCGCTG TCGCTCTTTT CCATCGATTG TTACGAGAGA CTGGGCCGTC GTCACATGAC CCCGTCGTCG ATGAAGTTTC TTTGCAAGCC GTCGGCAAAT CTGTCGATTG GAGCCCACCG CATGCTCGGG CTCGGGCAAC AACAACAATC CGCATCGAAT GTACGGTGA |
Protein |
| >Mp1g06600.1 MVSIFECQLV DGHHHQETRW IAREGAKRQK VVTTLQMDSN DDIIYEVMKH LDAKSLATAT CVSKQWRKVA EDESLWENVC IQHWPSPVAR QKQLRSVVLA LGGFRRLYVL CLRPLLARGR PQPQALPSSL KGAEESGERE WSKDEVHLSL SLFSIDCYER LGRRHMTPSS MKFLCKPSAN LSIGAHRMLG LGQQQQSASN VR |