Mp1g11040



Description

Annotation

Database ID Description
Pfam PF00271 Helicase conserved C-terminal domain
Coils Coil Coil
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
PANTHER PTHR45821 SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
SMART SM00490 helicmild6
SMART SM00487 ultradead3
Gene3D G3DSA:3.40.50.300 -
Pfam PF16719 SAWADEE domain
CDD cd18793 SF2_C_SNF
Gene3D G3DSA:3.40.50.10810 -
Pfam PF00176 SNF2-related domain
KEGG K10875 DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
KOG KOG0390 DNA repair protein, SNF2 family; [L]
MapolyID Mapoly0014s0121 -
GO GO:0003682 chromatin binding
GO GO:0080188 gene silencing by siRNA-directed DNA methylation
GO GO:0140658 ATP-dependent chromatin remodeler activity
GO GO:0005524 ATP binding

Nomenclature

Gene symbol Product Transcript ID Status
Mpsnf1.6 Chromatin related protein Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp1g11040.1 chr1:11568175..11576228 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g11040 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g11040 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.